Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3444 ATGGCTGAGATTTCAGGATCAAGCAATGGACACCACAGTGTTTCTTTGAACATCAAAGATGAACCCACGGCCGTCACCAGAAGAGAAGCAGCCGACTGTATCTCTGTACCTTTCATTCAAAAGTTGATTGCAGAGGTTGTGGGGACATATTTCTTGATATTTGCTGGTGGAGCATCAGTGGTCGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCAGGGATTTCAATCGTTTGGGGTTTGGTTGTAATGGTCATGGTCTATTCTGTTGGCCATATCTCTGGCGCTCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATTGCTCAAGTTCTTGGATCAACATTGGCAGGTGGGACACTCAGGCTAATATTCAATGGAGAACAAGACCACTTTGCTGGGACTCTCCCAAGTGACTCATATCTGCAGACCTTTGTCATTGAATTCATCATCACATTTTACCTAATGTTTGTGGTTTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCCGTTGGTGCCACAGTCCTTCTCAACGTGATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCCTGGGGCCAGCCATAGTATCAAGGCAGTTCAAAGGGTTATGGATATACATTGTAGCTCCGATTTCTGGGGCAATTTCAGGTGCTTTGGTGTACAACACCATTAGATTCACAGACAAACCTCTACGAGAGATCACAAAAAGTGCTTCTTTCCTCAAAGGACAAGGTCGTAGTGGTTCGCTTTGA 828 45.41 MAEISGSSNGHHSVSLNIKDEPTAVTRREAADCISVPFIQKLIAEVVGTYFLIFAGGASVVVNLSKDKVITFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLAGGTLRLIFNGEQDHFAGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPISGAISGALVYNTIRFTDKPLREITKSASFLKGQGRSGSL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53840840 53842356 + Lag0013936.1 Lac1g3444 597015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3444 275 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 CDD MIP 40 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 NCBIfam MIP family channel protein 44 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac1g3444 275 PANTHER AQUAPORIN NIP2-1 31 254 IPR034294 -
Lac1g3444 275 SUPERFAMILY Aquaporin-like 34 260 IPR023271 -
Lac1g3444 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Lac1g3444 275 Gene3D Glycerol uptake facilitator protein. 9 261 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0254 Lac-Chr11:2561332 Lac1g3444 Lac-Chr1:53840840 5.70E-83 dispersed
Lac11g1795 Lac-Chr11:32486240 Lac1g3444 Lac-Chr1:53840840 5.30E-52 dispersed
Lac1g3444 Lac-Chr1:53840840 Lac8g0663 Lac-Chr8:11678922 9.80E-59 dispersed
Lac1g3444 Lac-Chr1:53840840 Lac8g0645 Lac-Chr8:11004847 2.40E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3444 K09874 - csv:101219297 485.723