Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3451 ATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGATTTTTTGGAGGAGCTAGTCAACGAGCACGAAACTGAGGTGGAGATCGATCCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGATAATCGGACAGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGTAGTTGACTCCAGTGATCGCTGGGGAAGTACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTTTGGAGAAACATGGTGCAAAGCCTCTGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACCAACAGTGTGAACATTACCAAGGGAACATTCCGCATCGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGTGCTTGGAGAAGATCTATTCACCGACGAGGATAAAGTGAGAGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCTAATGTTGTGCAGTTTCTAGGTGCTGTTACTCAAAGTTGCCCGATGATGATCATTACAGAATATTTGCCAAAGGGAGATCTTGGAGCATTATTGAGTAGACAAAGATCAATGAAAACAATGACTGTTCTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCACGAGAACAAGCCAGCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAGACTTCGGAGTTAGCAAGTTATTGACAGTTAAAGAAGATAAACCTTCGACTTCTTCAGATACTACTCGAAGATATGAGGCTCCGGAGGTTTTCAAAAATAAAGAGTATGATACGAAGGCAGACGTATTTTCATTTGCGTTGATTCTACAAGAGATGATTGAAGCCTGTCCTCCATTTCCTGATGAGCCAGATAGCGTAGTTCCTAAATTGTATGCGACAGGAGAACGCCCCCCATTTACAGTACCACTTAAACGTTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGCTGGAACGAGAATCCAACAAAGAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTTGGTCATAAGAGGCGCTGGAAGGTCAGACCATTGAAATGCTTCCAGAATATTGAGGCAATGTTAAAGAAAGATCGTTCTCGTCGAAGCAGTTTCAATCTATCGACTCATTCTTCTGCCAGCAGTATATGA 1377 43.94 MKSPVRFKLGKQSSLAPDGHLDFLEELVNEHETEVEIDPRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAVVDSSDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPLVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRIASWRGTEVAVKVLGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSCPMMIITEYLPKGDLGALLSRQRSMKTMTVLRLALDIARGMNYLHENKPAPIIHRDLEPSNILRDDSGHLKVADFGVSKLLTVKEDKPSTSSDTTRRYEAPEVFKNKEYDTKADVFSFALILQEMIEACPPFPDEPDSVVPKLYATGERPPFTVPLKRYANGLKELIEECWNENPTKRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKKDRSRRSSFNLSTHSSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53873252 53877942 + Lag0013943.1 Lac1g3451 597022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3451 458 Gene3D Transferase(Phosphotransferase) domain 1 232 455 - -
Lac1g3451 458 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Lac1g3451 458 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Lac1g3451 458 CDD STKc_MAP3K-like 170 409 - -
Lac1g3451 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 61 410 IPR051681 GO:0004674(PANTHER)
Lac1g3451 458 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Lac1g3451 458 SMART ANK_2a 38 67 IPR002110 GO:0005515(InterPro)
Lac1g3451 458 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Lac1g3451 458 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Lac1g3451 458 Pfam Protein tyrosine and serine/threonine kinase 161 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3451 458 SUPERFAMILY Ankyrin repeat 19 132 IPR036770 -
Lac1g3451 458 SUPERFAMILY Protein kinase-like (PK-like) 167 413 IPR011009 -
Lac1g3451 458 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Lac1g3451 458 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515(InterPro)
Lac1g3451 458 PIRSF ILK 2 432 - -
Lac1g3451 458 FunFam Integrin-linked protein kinase family 24 147 - -
Lac1g3451 458 ProSiteProfiles Protein kinase domain profile. 121 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3451 458 Gene3D - 16 143 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0300 Lac-Chr12:3371442 Lac1g3451 Lac-Chr1:53873252 1.20E-84 dispersed
Lac13g0345 Lac-Chr13:2467957 Lac1g3451 Lac-Chr1:53873252 1.10E-67 dispersed
Lac1g3451 Lac-Chr1:53873252 Lac9g2245 Lac-Chr9:41820390 2.20E-140 dispersed
Lac1g3451 Lac-Chr1:53873252 Lac10g0994 Lac-Chr10:7987654 7.40E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85962 PF07714 PK_Tyr_Ser-Thr 7.10E-54 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3451 - - - 0.0