Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3453 ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGCAAGAGACGAAATGGGCTGCTCAAAAAGGCCTATGAACTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGTCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACGATTGATAGATATAAGAAGGCATCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTGCAGAACTCAAACAGGAACATGCTGGGTGAATCTCTAAGTTCTTTGAGTGTAAAAGATCTGAGAAACCTAGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGAATGAACTCCTCTTTGCTGAAGTTGAGTATATGCGGAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGCCAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCAACAGTATCCACGACAAGACAACATGGCTCTTCAATTAGTATAA 690 41.59 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRNLESKLEKGISRIRSKKNELLFAEVEYMRKREIDLHNNNQLLRAKIAESERNANMMGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMALQLV 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53893475 53899947 + Lag0013945.1 Lac1g3453 597024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3453 229 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g3453 229 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g3453 229 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g3453 229 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac1g3453 229 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g3453 229 FunFam agamous-like MADS-box protein AGL11 21 104 - -
Lac1g3453 229 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g3453 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 204 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac1g3453 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g3453 229 Gene3D - 21 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g3453 229 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac1g3453 229 Pfam K-box region 91 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac1g3453 229 SMART madsneu2 9 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac1g3453 229 Coils Coil 132 152 - -
Lac1g3453 229 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0169 Lac-Chr11:1574701 Lac1g3453 Lac-Chr1:53893475 4.50E-09 dispersed
Lac1g3453 Lac-Chr1:53893475 Lac5g2657 Lac-Chr5:45040827 1.00E-37 dispersed
Lac2g0369 Lac-Chr2:2756627 Lac1g3453 Lac-Chr1:53893475 2.80E-13 transposed
Lac2g0963 Lac-Chr2:7619653 Lac1g3453 Lac-Chr1:53893475 1.50E-24 transposed
Lac9g2247 Lac-Chr9:41849203 Lac1g3453 Lac-Chr1:53893475 3.90E-28 transposed
Lac9g2248 Lac-Chr9:41856938 Lac1g3453 Lac-Chr1:53893475 5.50E-27 transposed
Lac1g3453 Lac-Chr1:53893475 Lac10g0998 Lac-Chr10:8014426 8.40E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23394 PF01486 K-box 9.30E-28 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3453 K09264 - csv:101221430 428.328