Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g3453 | ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGCAAGAGACGAAATGGGCTGCTCAAAAAGGCCTATGAACTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGTCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACGATTGATAGATATAAGAAGGCATCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTGCAGAACTCAAACAGGAACATGCTGGGTGAATCTCTAAGTTCTTTGAGTGTAAAAGATCTGAGAAACCTAGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGAATGAACTCCTCTTTGCTGAAGTTGAGTATATGCGGAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGCCAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCAACAGTATCCACGACAAGACAACATGGCTCTTCAATTAGTATAA | 690 | 41.59 | MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRNLESKLEKGISRIRSKKNELLFAEVEYMRKREIDLHNNNQLLRAKIAESERNANMMGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMALQLV | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 53893475 | 53899947 | + | Lag0013945.1 | Lac1g3453 | 597024 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g3453 | 229 | PRINTS | MADS domain signature | 11 | 31 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac1g3453 | 229 | PRINTS | MADS domain signature | 46 | 67 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac1g3453 | 229 | PRINTS | MADS domain signature | 31 | 46 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac1g3453 | 229 | ProSiteProfiles | K-box domain profile. | 95 | 185 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac1g3453 | 229 | ProSiteProfiles | MADS-box domain profile. | 9 | 69 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac1g3453 | 229 | FunFam | agamous-like MADS-box protein AGL11 | 21 | 104 | - | - | |
Lac1g3453 | 229 | ProSitePatterns | MADS-box domain signature. | 11 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac1g3453 | 229 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 9 | 204 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac1g3453 | 229 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 18 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac1g3453 | 229 | Gene3D | - | 21 | 103 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac1g3453 | 229 | CDD | MADS_MEF2_like | 10 | 86 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Lac1g3453 | 229 | Pfam | K-box region | 91 | 179 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac1g3453 | 229 | SMART | madsneu2 | 9 | 68 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac1g3453 | 229 | Coils | Coil | 132 | 152 | - | - | |
Lac1g3453 | 229 | SUPERFAMILY | SRF-like | 10 | 84 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0169 | Lac-Chr11:1574701 | Lac1g3453 | Lac-Chr1:53893475 | 4.50E-09 | dispersed | |
Lac1g3453 | Lac-Chr1:53893475 | Lac5g2657 | Lac-Chr5:45040827 | 1.00E-37 | dispersed | |
Lac2g0369 | Lac-Chr2:2756627 | Lac1g3453 | Lac-Chr1:53893475 | 2.80E-13 | transposed | |
Lac2g0963 | Lac-Chr2:7619653 | Lac1g3453 | Lac-Chr1:53893475 | 1.50E-24 | transposed | |
Lac9g2247 | Lac-Chr9:41849203 | Lac1g3453 | Lac-Chr1:53893475 | 3.90E-28 | transposed | |
Lac9g2248 | Lac-Chr9:41856938 | Lac1g3453 | Lac-Chr1:53893475 | 5.50E-27 | transposed | |
Lac1g3453 | Lac-Chr1:53893475 | Lac10g0998 | Lac-Chr10:8014426 | 8.40E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23394 | PF01486 | K-box | 9.30E-28 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac1g3453 | K09264 | - | csv:101221430 | 428.328 |