Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3490 ATGGAGAAAGAGCCTCTTCTTCCGTATCTGAGCCCAAGAGGGAAACCGCCTCCTTTACCTCCTCAATTATGTCCGCTCCCGGAAAATGATGAAATTACTCTGCCTATGACGCCCACAGAGTTCAAAGACCGCCTGATCTTTGGCCCTTCATCGTCCCCTCAAGATGGGTCTCCTGTGTTCGACGCTTTGACGCTATCTCTTTCGTCATCGAGACCCTCTGCTTCTTCTTCTCTTCAGGACCCATCAACCCCTTTGGACCCGAAATCCCAATCGCAGTCTCAACAGGGGTGGCCTGTGGATTCCAATTACTCATGGCACAAAAGCAACCTCCATCGCTCCAAAACTGCACCTGCCATGGCGGTCATCAACGATGTCAACCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATAATCCGCCAAGCTGTTGTTCTTCTAATTATTTACTTATCGTTGGGCGTGCTTATCTATTGGATTAATCGTGATAAGTTTTCGGCTACCGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGTATTGTAACGATGTGCACTATTGGGTATGGAGATATTACGCCAAATAGTGCGGCGACGAAGCTATTCTCAGTATTTTTTGTGTTGGTGGGCTTTGGGTTCATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTGAGGAATGTAAAAAGGGGGGTGCAGCAGGAGTCTAGGAATTCCTATATAATTGATGTAAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCTTGGGCGTTGTGATACTTTGTATAGGAATTGGCATGGGTGTTATGCATTTTGTTGAGAACCTGGGGTGGTTGGATTCATTTTATCTTTCAGTCATGTCTGTGACAACGGTTGGATATGGTGATCAGGCATTCAAGTCGATGACTGGTCGTATTTTTGCTTCAATCTGGTTGCTCGTATCGACCCTTGCTGTTGCTCGGGCATTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCATAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTCTCTGAGTTTCTTGCTGCTGATATTGACAACAATGGCTTTGTCAGTAGGTCAGAGTATGTGATATACAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAGGTCATCACTGA 1278 44.76 MEKEPLLPYLSPRGKPPPLPPQLCPLPENDEITLPMTPTEFKDRLIFGPSSSPQDGSPVFDALTLSLSSSRPSASSSLQDPSTPLDPKSQSQSQQGWPVDSNYSWHKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVLIYWINRDKFSATETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVFFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQQESRNSYIIDVKKGRMRIRMKVALALGVVILCIGIGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLEGHH 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54198269 54201570 + Lag0013982.1 Lac1g3490 597061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3490 425 SUPERFAMILY Voltage-gated potassium channels 140 226 - -
Lac1g3490 425 Gene3D - 334 425 - -
Lac1g3490 425 Pfam Ion channel 272 341 IPR013099 -
Lac1g3490 425 Pfam Ion channel 147 226 IPR013099 -
Lac1g3490 425 Gene3D - 270 333 - -
Lac1g3490 425 MobiDBLite consensus disorder prediction 1 98 - -
Lac1g3490 425 MobiDBLite consensus disorder prediction 50 98 - -
Lac1g3490 425 PRINTS Two pore domain K+ channel signature 183 211 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lac1g3490 425 PRINTS Two pore domain K+ channel signature 303 312 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lac1g3490 425 SUPERFAMILY Voltage-gated potassium channels 254 361 - -
Lac1g3490 425 SUPERFAMILY EF-hand 363 421 IPR011992 -
Lac1g3490 425 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 145 372 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Lac1g3490 425 MobiDBLite consensus disorder prediction 10 25 - -
Lac1g3490 425 FunFam Two-pore potassium channel 5 129 239 - -
Lac1g3490 425 Gene3D - 137 237 - -
Lac1g3490 425 FunFam Two-pore potassium channel 3 248 362 - -
Lac1g3490 425 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3490 Lac-Chr1:54198269 Lac2g1502 Lac-Chr2:12995117 6.80E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3490 K05389 - csv:101220017 759.214