Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3492 ATGTCAGATGAAATGTTTAGAGACGTTTTTTTCTCGGACGGTTTCCGAGACGGTTGGTTGGGTGATTTAGAATCAGGCATGGATGAATACGACTCTCTGGCGAGAGCTTTTGGCGTGTCGGGTTCTTCGAATAATAATGAAATTTCGGGGACTCCGATGAATTCTTGTGGTTCGTTGTCGTCTTCTGATGCTGGAGCTGAGGAGGATGATTCAGCTGGGAAGGAAAAGGATAAACAGATCAAAGAGATGGACGATGATTCTGGACAGACTTCTAAGGCTGCGGCGAAATCGAAGAAGAAAGGAGAGAAGAAAGAGAGAGAGCCGAGATTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAACAGTGCCTTTCCCAGGAGCTACTATAGATGCACAACTCAGAAATGTGGAGTGAAGAAACGGGTAGAGAGATCGTTCGAAGATCCGTCCATTGTGATTACGACTTACGAAGGTCAACACAACCACCCAATCCCAGCCACACTGAGAGGAAATCTGTCGGCCGCCGCCGCGTTTCCACCGTCCATGCTGACACCAATGCCAGTGGTCGGTGGTGGTGCCGCGTTCCTCCCAGAACTCTTGACCAATACTTCCGGCAACAACCAGGCCGTCGGCGGCGGCGCAGGCTCCGTTTATTCACAAGGCAGCTTCGGCTATCCTTACAACGGGCGGCAGCCGGAATATGGGCTTCTGCAGGACATTTTTCCGGCTCCGTCGTCGTTCTACAACCGGCAGCCGTGA 807 50.43 MSDEMFRDVFFSDGFRDGWLGDLESGMDEYDSLARAFGVSGSSNNNEISGTPMNSCGSLSSSDAGAEEDDSAGKEKDKQIKEMDDDSGQTSKAAAKSKKKGEKKEREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSAFPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPIPATLRGNLSAAAAFPPSMLTPMPVVGGGAAFLPELLTNTSGNNQAVGGGAGSVYSQGSFGYPYNGRQPEYGLLQDIFPAPSSFYNRQP 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54217786 54219261 + Lag0013984.1 Lac1g3492 597063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3492 268 SMART WRKY_cls 121 180 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g3492 268 Pfam WRKY DNA -binding domain 122 179 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g3492 268 MobiDBLite consensus disorder prediction 67 109 - -
Lac1g3492 268 FunFam WRKY transcription factor 57 107 181 - -
Lac1g3492 268 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 187 IPR044810 GO:0003700(InterPro)
Lac1g3492 268 MobiDBLite consensus disorder prediction 37 109 - -
Lac1g3492 268 SUPERFAMILY WRKY DNA-binding domain 113 181 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g3492 268 MobiDBLite consensus disorder prediction 37 65 - -
Lac1g3492 268 Gene3D WRKY domain 105 182 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac1g3492 268 ProSiteProfiles WRKY domain profile. 116 181 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0424 Lac-Chr11:4337707 Lac1g3492 Lac-Chr1:54217786 7.40E-37 dispersed
Lac12g0876 Lac-Chr12:9081101 Lac1g3492 Lac-Chr1:54217786 3.00E-40 dispersed
Lac1g3492 Lac-Chr1:54217786 Lac6g0787 Lac-Chr6:6741464 1.80E-36 dispersed
Lac1g3492 Lac-Chr1:54217786 Lac9g2256 Lac-Chr9:41926862 4.80E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23395 PF03106 WRKY 3.30E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3492 - - - 0.0