Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3495 ATGGCTGCTTCCACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCTGTGAAGCTCTCCCCCAACGCCCCTGAGATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACTGCCAGCAAGCCAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTTAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACCTCACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACATTCGCCAAGAACCGTGAGCTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGCGTCTTCCCCGAGCTTCTGTCCCGCAATGGCGTGAAGTTTGGCGAGGCTGTGTGGTTCAAGGCTGGTTCTCAGATCTTCAGCGAGGGAGGCCTCGACTACTTGGGCAACCCGAGCTTGGTCCACGCACAGAGCATTTTGGCAATCTGGGCCTGCCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCTGGCGGACCACTCGGAGAGATCACCGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAGCTCAAAGTGAAGGAGCTCAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCATGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGA 798 57.77 MAASTMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54257968 54258765 + Lag0013987.1 Lac1g3495 597066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3495 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Lac1g3495 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lac1g3495 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Lac1g3495 265 MobiDBLite consensus disorder prediction 19 46 - -
Lac1g3495 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Lac1g3495 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1066 Lac-Chr10:8639904 Lac1g3495 Lac-Chr1:54257968 1.50E-149 dispersed
Lac11g0445 Lac-Chr11:4584187 Lac1g3495 Lac-Chr1:54257968 2.50E-136 dispersed
Lac1g3495 Lac-Chr1:54257968 Lac9g2258 Lac-Chr9:41942147 1.60E-146 dispersed
Lac1g3495 Lac-Chr1:54257968 Lac5g1661 Lac-Chr5:33724674 2.80E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3495 K08912 - csv:101221671 532.332