Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3496 ATGGTTAATGTTGTCAGTTTAGCCATTTTCATGATAGCTAGTTTTGTTCCAGTTAGAGTTCTATTTGGCCAAGACCAATCGGCCATGGAAGTTGAACTGGAAACCTTAAAGGCCTTCAAGAGTTCCATCCATTTCGACTCATTGGGAGCACTTTCAGATTGGACGGACCTCAACCATCACTGCAATTGGTCTGGCATTATCTGTGACTCTGATTCCAAGCGGGTCATTTCGATTACTTTGATTGATCAACAGCTTAAGGGCGAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTCGAGGTTCTTGATTTGACTCAGAATTCGTTTACCGGACAGATTCCAGGTGAATTGGGTTCGTGTTCCAACCTCTCTCAGCTCACTCTATACAGAAATTTTCTTTCAGGTCACATTCCATCCCAGTTGGGAAACCTTGGCCTCCTACAATCAGTTGATTTGGGAGATAACTTTTTAAAAGGAAGCATTCCTGAGAGCATTTGCAATTGCACGAACTTGTTAGCATTTGGCGTGGTATTTAATAATCTCACGGGCAGAATCTCATCCAACATAGGAAACTTGATCAATCTTCAAATTCTGGTTGCTTACGGCAACAAGCTAGAAGGTTCCATTCCCATCTCGATTGGCAAATTAGACGCACTGCAAGCTCTAGATTTTAGCCAGAACAACTTGTCTGGGAATATACCAGTAGAGATTGGGAATTTGTTGAATTTGGAGTATCTCTTATTATTTGAGAATGCTTTGGTTGGGAAAATTCCTGAGGAGATAGGCAAATGTGAGAAGCTTCTTGCTCTAGAACTATACAAAAATAAGTTCAGTGGTCCAATTCCTTCACAGCTAGGGTCTCTGGTTCACTTACAAACCTTGCGTCTGTATACAAATAGATTAAATTCCACTATACCACAATCTCTCTTACACTTGAAAGGTTTAACCCATTTGTTTCTCTCAGAGAATGAGTTAAGTGGAACTATATCTTCTGATATTGGATCTTTGAGATCGTTGCAGGTTTTGACTCTTCACTCGAATAGATTCTCTGGGGTGATTCCTTCATCTTTGACAAACTTGTCAAACCTGACACATTTGTCTCTGAGCTTCAATTTATTCACAGGAGAGATTCCATCCAATATAGGTTTGCTTAATAATTTGAAGAGATTGACTTTGAGCGGCAATCTCCTAGCGGGTTCAATTCCATCTAGTATTACCAACTGCACCCAGCTTTCTATCATCGATCTTTCATTTAATAGGCTGACAGGGAAAATACCTCTAGGATTTGGGAAGTTGCGGAATCTTACTTCCCTCTTCCTTGGATCAAATAGGATTTTTGGTGAAATCCCAGATGAATTCTTTAATTGCTCATCTCTTGATCTTGTAGACCTGTCTCTAAACAATTTCACTGGATTGTTAAAACCCAGTATTAGCAAGCTTTCCAATATCCAGGTTTTCAGAGCCTCATCAAATTCATTTTCTGGGGAAATTCCAAGGGACATTGGCAACTTAAGCAGACTCAACACATTAATACTTTCAGGAAATAAATTTTCAGGTCAAATTCCTGGGGAGTTGTCTAACCTGTCTCTTCTTCAAGCTCTTTCTTTGCACGACAATGCATTGGAAGGAAGGATTCCAGAAAAAATATTTGATCTGAAACAACTGGATCATCTTCATTTGCAGAACAACAAGTTCACAGGTCCAATTCCAGTTGCCATCTCAAAACTAGAGTTTCTTTCATATTTGGATCTCCATGGTAACATGCTCAATGGATCCATCCCTAAAAGTATGAGGAACCTTCATCGACTTGTGATGTTAGATCTGTCCCACAACCATCTATCTGGGTCAATTCCTGGGGTTTTAATCTCAGGTATGAAAAATATGCAGCTATACATGAACTTGTCATACAATTTCCTGGAAGGAGGTATTCCAACTGAGCTTGGGTTGTTGCAAATGTTACAATCTATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCAACAATTGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATGGTCTTTCTGGTATGCTTCCAGGTAAAGCTTTTACTGGAATGAATATGCTCTCAAACTTGAACCTTTCACGGAACAAAATATCTGGTGAAATCCCAGAAGAGTTGGAAAATCTGGAGCATTTGTACTCTTTGGACCTTTCTCAGAATCAGTTCAATGGAAGCATCCCTCAGAACGTTGCAAGGCTTTCTTCTCTGAAGTATGTCAACCTTTCCTTCAATCAACTAGAAGGTCCTGTTCCTGACACCGGAATATTTCAAAAAATAAATGTGTCAAGCTTGATAGGAAATCCTGCTCTTTGTGGATCCAAGTTCTTTGCTCCTTGTGAAAAGAAGGATTCAAGACATCTATCAAAAAAGGCCTTACTAATTCTCATAATCCTTGGATCTGTTATTGTACTTTTAGCTATAATTTTCTTAATTCTAGGCCTAGATCGATATTGTAAGCTTGAGAGATCTAAAAGTATTGAGAATCCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGACATAGAGATTGCAACAGAATACTTCAGTGAAAACAACATTCTAGGTTCCAGTATTTTAAGCACTGTCTACAGGGGTCAACTGGAAAATGGACAGATTGTAGCTGTAAAAAAATTGAATTTGCAATATTTCTCTACGGAATCAGATGATTATTTCAGTAGAGAAATCAAGATTCTTAGTCAACTTAGACACAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAACTGAAGGCTATCGTTCTTGGATATATGGAAAATGGGAACTTGGATAGAATAATACATAACCATGGAACAGATCAAATAAGTTGGACGTTGTCAAAGAGAGTTGAAATTTGTGTTTCTGTTGCTACTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGTGACTTGAAGCCTTCAAACATCCTTCTGGATGGAGACTGGGTAGCCCATGTGAGCGATTTTGGAACTGCTAGAGTGTTGGGGGTGCAAAGCCAAGACACTAGCGGCGTTTCCTCTTCACCAGCCTTTGAAGGCACTATCGGATATTTGGCTCCAGAGTTTGCCTACGTGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTCGGCATAATACTGATGGAATTTCTGACAAAGAAAAGGCCAACTGCAACCATTGAAGCTCATGGACTCCCAATCAGCTTGCCGCAACTGGTAGAAAGAGCTCTAGCAATTGGAACGGAAGGGCTTATTCAAGTTTTGGACCCTGTGCTGGTCTTGAATGATTCAAAGGAGCATAAGAGGTTAGAAGAACTACTCAAACTAGCACTAAGCTGTTCCAACCAAAATCCTGAACATAGACCTGACATGAATGAAGTTCTGTCTATCCTTCTGAAGCTGCAGAGGGATGAATAG 3480 39.8 MVNVVSLAIFMIASFVPVRVLFGQDQSAMEVELETLKAFKSSIHFDSLGALSDWTDLNHHCNWSGIICDSDSKRVISITLIDQQLKGEISPFIGNLSALEVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGHIPSQLGNLGLLQSVDLGDNFLKGSIPESICNCTNLLAFGVVFNNLTGRISSNIGNLINLQILVAYGNKLEGSIPISIGKLDALQALDFSQNNLSGNIPVEIGNLLNLEYLLLFENALVGKIPEEIGKCEKLLALELYKNKFSGPIPSQLGSLVHLQTLRLYTNRLNSTIPQSLLHLKGLTHLFLSENELSGTISSDIGSLRSLQVLTLHSNRFSGVIPSSLTNLSNLTHLSLSFNLFTGEIPSNIGLLNNLKRLTLSGNLLAGSIPSSITNCTQLSIIDLSFNRLTGKIPLGFGKLRNLTSLFLGSNRIFGEIPDEFFNCSSLDLVDLSLNNFTGLLKPSISKLSNIQVFRASSNSFSGEIPRDIGNLSRLNTLILSGNKFSGQIPGELSNLSLLQALSLHDNALEGRIPEKIFDLKQLDHLHLQNNKFTGPIPVAISKLEFLSYLDLHGNMLNGSIPKSMRNLHRLVMLDLSHNHLSGSIPGVLISGMKNMQLYMNLSYNFLEGGIPTELGLLQMLQSIDFSNNNLTGIIPATIGGCRNLFFLDLSGNGLSGMLPGKAFTGMNMLSNLNLSRNKISGEIPEELENLEHLYSLDLSQNQFNGSIPQNVARLSSLKYVNLSFNQLEGPVPDTGIFQKINVSSLIGNPALCGSKFFAPCEKKDSRHLSKKALLILIILGSVIVLLAIIFLILGLDRYCKLERSKSIENPEPSLDYACTLKRFDKKDIEIATEYFSENNILGSSILSTVYRGQLENGQIVAVKKLNLQYFSTESDDYFSREIKILSQLRHRNLVKVLGYAWESQKLKAIVLGYMENGNLDRIIHNHGTDQISWTLSKRVEICVSVATGMQYLHHGYDFPIIHCDLKPSNILLDGDWVAHVSDFGTARVLGVQSQDTSGVSSSPAFEGTIGYLAPEFAYVGKVTTKVDVFSFGIILMEFLTKKRPTATIEAHGLPISLPQLVERALAIGTEGLIQVLDPVLVLNDSKEHKRLEELLKLALSCSNQNPEHRPDMNEVLSILLKLQRDE 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54259471 54263240 - Lag0013988.1 Lac1g3496 597067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3496 1159 SUPERFAMILY L domain-like 73 234 - -
Lac1g3496 1159 Gene3D Ribonuclease Inhibitor 475 696 IPR032675 -
Lac1g3496 1159 Gene3D Ribonuclease Inhibitor 697 802 IPR032675 -
Lac1g3496 1159 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Lac1g3496 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 993 1005 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3496 1159 Gene3D Phosphorylase Kinase; domain 1 832 946 - -
Lac1g3496 1159 SMART LRR_typ_2 600 624 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 432 456 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 336 359 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 674 698 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 747 772 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 699 723 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 96 120 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 360 383 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 384 408 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 528 552 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 144 168 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 216 240 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 576 599 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 288 312 IPR003591 -
Lac1g3496 1159 SMART LRR_typ_2 650 673 IPR003591 -
Lac1g3496 1159 ProSiteProfiles Protein kinase domain profile. 868 1159 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3496 1159 SMART LRR_sd22_2 96 125 - -
Lac1g3496 1159 SMART LRR_sd22_2 360 383 - -
Lac1g3496 1159 SMART LRR_sd22_2 384 410 - -
Lac1g3496 1159 SMART LRR_sd22_2 699 725 - -
Lac1g3496 1159 SMART LRR_sd22_2 600 627 - -
Lac1g3496 1159 SMART LRR_sd22_2 312 335 - -
Lac1g3496 1159 SMART LRR_sd22_2 216 235 - -
Lac1g3496 1159 SMART LRR_sd22_2 432 451 - -
Lac1g3496 1159 FunFam Leucine-rich repeat receptor protein kinase EMS1 449 548 - -
Lac1g3496 1159 SMART serkin_6 868 1153 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3496 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 182 - -
Lac1g3496 1159 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 526 1155 IPR051564 GO:0016020(PANTHER)
Lac1g3496 1159 Gene3D Transferase(Phosphotransferase) domain 1 947 1159 - -
Lac1g3496 1159 CDD STKc_IRAK 874 1155 - -
Lac1g3496 1159 Pfam Leucine Rich Repeat 315 336 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine Rich Repeat 507 528 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine Rich Repeat 411 432 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine rich repeat 337 397 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine rich repeat 647 687 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 Pfam Leucine rich repeat 691 736 IPR001611 GO:0005515(InterPro)
Lac1g3496 1159 SUPERFAMILY Protein kinase-like (PK-like) 844 1153 IPR011009 -
Lac1g3496 1159 Gene3D Ribonuclease Inhibitor 28 179 IPR032675 -
Lac1g3496 1159 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 183 429 - -
Lac1g3496 1159 SUPERFAMILY L domain-like 182 470 - -
Lac1g3496 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 829 946 - -
Lac1g3496 1159 Gene3D Ribonuclease Inhibitor 378 474 IPR032675 -
Lac1g3496 1159 Gene3D Ribonuclease Inhibitor 180 281 IPR032675 -
Lac1g3496 1159 Gene3D Ribonuclease Inhibitor 282 377 IPR032675 -
Lac1g3496 1159 Pfam Protein kinase domain 870 1150 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3496 1159 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 622 797 - -
Lac1g3496 1159 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 553 620 - -
Lac1g3496 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 947 1159 - -
Lac1g3496 1159 SUPERFAMILY RNI-like 449 762 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2977 Lac-Chr1:50501668 Lac1g3496 Lac-Chr1:54259471 5.80E-09 dispersed
Lac1g3496 Lac-Chr1:54259471 Lac6g0268 Lac-Chr6:2156566 5.40E-50 dispersed
Lac1g3496 Lac-Chr1:54259471 Lac11g0583 Lac-Chr11:5926640 5.40E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85963 PF00069 Pkinase 3.20E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3496 K13420 - csv:101215973 1876.29