Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g3505 | ATGGGCCTTCTAGGAGCTTTCCCGCCTAAAGTGTCTATTTTTCGCGCCAAATCTGAACTCCTTATTGACAGCGGCCAATCGGAAGCCTTTTGTCTCTCGATTCAACGTTCTCTCTCACTCATTTACTCTCTCTCTCTCTCTATCGCCGCCGGTTCGTCGACGAAGAAGCAAAGGGGAGGAAAGTTAGGGCACGGGAAATGGACGTCGGTGAAGAAATTAGGGCAGCTCACAAGCGAGACTTTCTGGAATTCCTTGAACAGGATGTGCGTTGGGAAAGGTATTTACATGGACGAGATCAAAGCCATGATCAATCATAAGCGACATCGCCTTATAATCAACATTTCTGATCTTCATTCGTTCAGAGACCTTGGTCCCAGGGTGCTCAGGAATCCCAGCGAGTACATTCAACCATTCTGCGATGCAGTCACAGAAACTGCTCGCAGTATTGACCCAAAATACCTCAAGGAAGGAGAGCAAGTTTTAGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAATTCATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTTCACTTCTGCCCAACAACTGGGGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGAAAATGGCAACTTGTTGGTTACTGAGTATGGCTTGTGTAGATACAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCTCCTGGTCAGCTTCCAAGAACAGTGGATGTCATAGTTGAGGATGACTTAGTTGACTGTTGCAAGCCGGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCGTGAATGGAGTGTTCAGGACTATTCTTGTAGCTAACAACGTTTCTCTTCTAAACAAAGAGGCAAATGCACCAATATACAGTCCCGAGGACTTGAAAAATATTAAAAAGATAGCTGAAAGAGATGACACCTTTGACCTTCTCGGTAATTCTCTTGCACCTTCCATATATGGACATTCGTGGATAAAAAAAGCAGTGATACTATTGATGCTTGGTGGAGTGGAGAAAAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCTCAACTTTTAAGGGCGATTATGAATATTGCACCCTTGGCAATATCCACAACAGGCCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACTTCAGATCAGGAAACAGGAGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGTTCATTGACACCAACAAAGAATATAGGTCTTCCAGACTCCCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGACCGTCATATTTCGGAACATGTATTGCGTATGCACCGGTTTCGTTCTGTACTTGATGGAGGTGATGCTGGGGGCTCATTGTATGGAAGAGAGGATGAAGCTGAAGCTGACTCTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAGAAGACAGAACGTGGTCGGAAGCGAGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCACTATGCTAAGCATAGGATACAACCTGACCTAACTGATGAGGCATCTGAGCACATTGCAACTGCATATGCTGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACTGCCAGAACCCTGGAAACCATTATACGGCTCTCAACTGCTCATGCAAAACTGAAGTTGAGTAGAAAGGTTTCAAAATCTGATGTCGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAGGAAATGGAAAGAAAACGTCAAGCTGAACATCAAACAGTGGAAGATGATAGACCAGAGCGTAGTGCCAAAAGAAGAGAGGATAGCTCAAGAACAGATACCATGGAAGTCGATGATCCTCCTACTGAACCTGTACTTGATCCGTCTGCAGCAAGAATAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTGTATCTATTGCCGACATTGAGAATATCGTTAATGCTGGAGCAGATACTCGTTACACAACAGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGATAATGATAGCTGATGACATGGTCCATATGATATCATGA | 2523 | 43.8 | MGLLGAFPPKVSIFRAKSELLIDSGQSEAFCLSIQRSLSLIYSLSLSIAAGSSTKKQRGGKLGHGKWTSVKKLGQLTSETFWNSLNRMCVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSVNGVFRTILVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRFRSVLDGGDAGGSLYGREDEAEADSSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEHIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKEMERKRQAEHQTVEDDRPERSAKRREDSSRTDTMEVDDPPTEPVLDPSAARIEAFNSLFGQHMRANHLDLVSIADIENIVNAGADTRYTTAEIMLLLQRLQDDNRIMIADDMVHMIS | 840 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 54305536 | 54310619 | + | Lag0013997.1 | Lac1g3505 | 597076 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g3505 | 840 | Gene3D | - | 76 | 166 | - | - | |
| Lac1g3505 | 840 | Pfam | MCM N-terminal domain | 91 | 165 | IPR027925 | - | |
| Lac1g3505 | 840 | Pfam | MCM AAA-lid domain | 620 | 703 | IPR041562 | - | |
| Lac1g3505 | 840 | Pfam | MCM P-loop domain | 344 | 566 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac1g3505 | 840 | ProSiteProfiles | MCM family domain profile. | 356 | 562 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac1g3505 | 840 | Coils | Coil | 708 | 734 | - | - | |
| Lac1g3505 | 840 | Pfam | MCM OB domain | 176 | 306 | IPR033762 | - | |
| Lac1g3505 | 840 | CDD | MCM3 | 359 | 705 | - | - | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 274 | 286 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 694 | 709 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 248 | 262 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 525 | 535 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 558 | 568 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Lac1g3505 | 840 | Gene3D | - | 202 | 256 | - | - | |
| Lac1g3505 | 840 | FunFam | DNA helicase | 202 | 256 | - | - | |
| Lac1g3505 | 840 | SMART | mcm | 171 | 707 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac1g3505 | 840 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 366 | 719 | IPR027417 | - | |
| Lac1g3505 | 840 | Gene3D | - | 176 | 306 | IPR012340 | - | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 509 | 521 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 457 | 471 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 536 | 544 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 397 | 412 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac1g3505 | 840 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 485 | 498 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac1g3505 | 840 | SUPERFAMILY | Nucleic acid-binding proteins | 90 | 325 | IPR012340 | - | |
| Lac1g3505 | 840 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 85 | 784 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Lac1g3505 | 840 | MobiDBLite | consensus disorder prediction | 715 | 760 | - | - | |
| Lac1g3505 | 840 | ProSitePatterns | MCM family signature. | 465 | 473 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Lac1g3505 | 840 | MobiDBLite | consensus disorder prediction | 715 | 770 | - | - | |
| Lac1g3505 | 840 | Gene3D | - | 338 | 728 | IPR027417 | - | |
| Lac1g3505 | 840 | SMART | AAA_5 | 398 | 551 | IPR003593 | GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g3505 | Lac-Chr1:54305536 | Lac4g2531 | Lac-Chr4:44520817 | 6.20E-96 | dispersed | |
| Lac1g3505 | Lac-Chr1:54305536 | Lac7g1551 | Lac-Chr7:17284273 | 2.20E-93 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g3505 | K02541 | - | csv:101210889 | 1394.41 |