Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3541 ATGGCTTCCAGGTCCGGCAGTCATAACAGAACGCGAGTGGGGAGGTATGAGCTAGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGGGAAAACGTGGCGATCAAAATCCTCGACAAAGAGAAGATTCTCAAGCACAAGATGATCGGACAGATTAAACGTGAAATATCAACAATGAAACTCATTAGACATCCAAACGTCATACGCATGTATGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTATTTGACAAAATTTCAAGCAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCACAGCAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTGTTGGATGCTAGTGGTGTTCTAAAAGTTTCAGATTTCGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCAATAATAAAGGCTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTATTTGCCATTTGAAGAATCCAGTCTCACGGCTTTGTATAAGAAGATATTCAAGGCTGACTTCACGTGTCCTCCATGGTTCTCCTCAAGTGCTAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCATTGACTAGAATTACAATTGCCGAGGTCCTCGAGAATGATTGGTTTAAGAAAGGATACAAGGCACCCACTTTTGAAAATGACGAAATCAATCTTGATAACAACATTGATGACATCTTTAATGAATCAGAGTCGGATCATAACCTTGTTGTTGAGAGAAGAGAAGATAGACCTGCGTCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCTCTCTTTTTGAGAAGCAAATGGGGCTAATTAAACGTGAAACGAGATTCACATCCAATCGTCCTGCAGATGAAATCATTTCCAAGATTGAAAAAACTGCAGTTCCTTTGGGCTTTGATGTGAAGATTAACAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGTAAAGGTCATTTATCGATTGCAACAGAGATTTTTCAGGTTGCTCCTTCATTGCACATGGTGGAGCTTCGCAAAGCTGGAGGTGATACTTTAGAATTTCAAAAGTTCTATAACAACCTCTCAACTGGACTGAAAGATATTGTATGGAGATATGGAGATGAGATGGAGCAGGAAACTAATGGTGCAGATGGTTGA 1362 41.7 MASRSGSHNRTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEKILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKISSKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEESSLTALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKAPTFENDEINLDNNIDDIFNESESDHNLVVERREDRPASPVTMNAFELISKSRGLNLASLFEKQMGLIKRETRFTSNRPADEIISKIEKTAVPLGFDVKINNFKMKLQGEKTGRKGHLSIATEIFQVAPSLHMVELRKAGGDTLEFQKFYNNLSTGLKDIVWRYGDEMEQETNGADG 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54641919 54646972 + Lag0014033.1 Lac1g3541 597112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3541 453 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 427 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac1g3541 453 FunFam Non-specific serine/threonine protein kinase 9 313 - -
Lac1g3541 453 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3541 453 CDD CIPK_C 320 435 - -
Lac1g3541 453 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Lac1g3541 453 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Lac1g3541 453 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165(InterPro)
Lac1g3541 453 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Lac1g3541 453 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3541 453 FunFam Non-specific serine/threonine protein kinase 313 439 - -
Lac1g3541 453 SUPERFAMILY Protein kinase-like (PK-like) 13 279 IPR011009 -
Lac1g3541 453 Gene3D Kinase associated domain 1, KA1 314 439 - -
Lac1g3541 453 CDD STKc_SnRK3 15 270 - -
Lac1g3541 453 Gene3D Transferase(Phosphotransferase) domain 1 96 279 - -
Lac1g3541 453 Pfam NAF domain 316 375 IPR004041 GO:0007165(InterPro)
Lac1g3541 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3541 453 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1907 Lac-Chr12:35629490 Lac1g3541 Lac-Chr1:54641919 8.60E-73 dispersed
Lac1g3541 Lac-Chr1:54641919 Lac7g0095 Lac-Chr7:797547 1.90E-176 dispersed
Lac8g2588 Lac-Chr8:43528216 Lac1g3541 Lac-Chr1:54641919 1.50E-28 dispersed
Lac1g3541 Lac-Chr1:54641919 Lac10g1109 Lac-Chr10:9128808 1.50E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85964 PF00069 Pkinase 1.70E-75 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3541 - - - 0.0