Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3550 ATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGAGGAGAGTTCTGAACTCGGAGCTTTGGCATGCTTGTGCGGGCCCTCTTGTCTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTACTTTCCACAGGGTCACAGCGAGCAGGTTGCTATATCAACCAACAGAGAAGTGGATGCACATATACCTAGTTATCCAAGCTTGCCGCCACAACTTATCTGCCAGCTTCACAATGTTACCATGCATGCAGATGTTGAGACAGATGAAGTGTATGCTCAAATGACCTTGCAACCGCTCAGTGCTCAAGAGCAAAAGGAGCCCTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAGCCAACCAATTATTTTTGTAAAACGTTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTGTTTCCTCCTTTGGACTTTACTCAGCAACCACCTGCTCAGGAGTTGATTGCAAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAACCCAAAAGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCCGTGATCTTTATTTGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAGACGGTGATGCCCTCATCAGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCGAGGGCTAGCCCATCAGAGTTCATCATACCTCTGGCCAAGTATGTCAAGGCTGTGTACCATACCCGTGTTTCAGTCGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCGAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGCGATTTAGATCCTGCCCGGTGGCCAAACTCGCACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTAACGACCTTCCCAATGTATCCGTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTGCCCTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTAAATTCTCAACTAATGTGGCTACGGGGAGATGGTTTAGATCGTGGAATTCAACCTCTCAACTTTGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTCGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCCAAGGCACAGGCGGCTTCACTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGGCCTGCTACTTTCATGCCACCTCAGATGTTGCAGCAGCCTCAGCCTCAGCCTCAGCCTCAACAGACCTTTCTTCAGGGTGAACATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAACACAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCAGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTACCATGTCTACAATGTCACAGTTTGGTTCTGCATCCCAATCCCAAGCCCAAGCCTTGCAAACTATTCCTCCCTTATGCCGGCAGCAGAGTTTTTCTGATTCAAATGCCAACCATGTGACAAGTCCTATCATTTCACCATTGCACAGCCTGTTAGGTTCATTTCCACAAGACGAAGCGTCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACATGGCCATCAAAGCGAGCTGCAGTCGATCCTCTTCTCTCTTCTGGCAATTCGCAGTTTGTTCTTCCCCAGGGGGAAAACATGGGGACAACTCAGACCAATATCTCTCAGAATGCTATTTCATTGCCGCCTTTTCCTGGTAGAGAGTGTTCATTAGATCAAGGGAATGCTGACCCGCAGAGTAATCTTCTCTTCGGTGTCAATATCGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCTAACCTTAGAGGAATCTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCGTCCAATTATGTGAATACTTCTGGTACCAACTTCTCTGCCAATGCAACTGGGACACCTTCCAATTGCATTGAGGATTCTTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTGAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCGCTGGATATTTCCAAATTCAGCAGTTACCATCAGTTACGCGGTGAGCTCGCTCACATGTTCAACCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACGAGGCCTAGAGCTCTTGAACTCGGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTATGCCAACAGACAGGAGTCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2721 47.89 MRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPATFMPPQMLQQPQPQPQPQQTFLQGEHENQHLSHSQAQTQPTVLQQEIKHQTFNNQQQQQQQQQQQQQQQVFDHQQIPSTMSTMSQFGSASQSQAQALQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDEASQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLPQGENMGTTQTNISQNAISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTSGTNFSANATGTPSNCIEDSSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRGELAHMFNLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54711541 54716617 - Lag0014042.1 Lac1g3550 597121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3550 906 MobiDBLite consensus disorder prediction 473 516 - -
Lac1g3550 906 Gene3D - 125 228 IPR015300 -
Lac1g3550 906 FunFam Auxin response factor 125 229 - -
Lac1g3550 906 MobiDBLite consensus disorder prediction 490 516 - -
Lac1g3550 906 FunFam Auxin response factor 767 861 - -
Lac1g3550 906 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Lac1g3550 906 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Lac1g3550 906 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Lac1g3550 906 SUPERFAMILY CAD & PB1 domains 764 847 - -
Lac1g3550 906 Gene3D - 291 363 - -
Lac1g3550 906 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac1g3550 906 ProSiteProfiles PB1 domain profile. 772 856 IPR053793 -
Lac1g3550 906 MobiDBLite consensus disorder prediction 528 549 - -
Lac1g3550 906 FunFam Auxin response factor 291 363 - -
Lac1g3550 906 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 863 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac1g3550 906 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677(InterPro)
Lac1g3550 906 Gene3D - 769 861 - -
Lac1g3550 906 Pfam AUX/IAA family 768 861 IPR033389 -
Lac1g3550 906 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3550 Lac-Chr1:54711541 Lac3g0024 Lac-Chr3:237205 2.30E-104 dispersed
Lac1g3368 Lac-Chr1:53290925 Lac1g3550 Lac-Chr1:54711541 1.10E-93 transposed
Lac2g0162 Lac-Chr2:1232499 Lac1g3550 Lac-Chr1:54711541 4.60E-172 transposed
Lac6g2214 Lac-Chr6:38709954 Lac1g3550 Lac-Chr1:54711541 1.40E-167 transposed
Lac6g3115 Lac-Chr6:48549666 Lac1g3550 Lac-Chr1:54711541 4.50E-170 transposed
Lac1g3550 Lac-Chr1:54711541 Lac10g1118 Lac-Chr10:9250018 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23400 PF02309 AUX_IAA 5.20E-07 CL0072 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3550 K14486 - csv:101210406 1652.11