Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac1g3558 | ATGAGTTCCTCTAAACCCAAATCCCAAAAGCCTCCATTGAATTACGGCTCACCATGTGCAGCATGTAAATTTCTAAGAAGAAAATGTCTTCCAGACTGCATTTTTGCTCCACATTTTCCAGCAGACCAGCCTCAAAAATTCGAACTTGTACATAAAATTTACGGTGCCAGTAACACCTCTAAGATTCTTAACCAGTTGAGCTATGATCTGCGTGACGAGGCCGTTAAGTCTCTAGTCTACGAGGCAGAGGCTCGGGTGAATGAGCCAGTATATGGTTGCGTTGGTTTTATAGCAATTCTTCAAGAGAAGCTTAGACAGCTTCAAACTGAACTCTCTGCCACCCGGAGAGAGCTTTCAACTTACATGGTATCAAAGACACCAGCTGCAAACTTTTCGGTTCCGCAGTCATTGCAGATGCCTCGCGATGGTTCGTCGAGTTCGTCTGCAATGACTGGACCATTGAGTGAGAACACTAGAAAATCTTTGTATGAACCGATGCCGCAACGAATGACAATGGACGGTCGATCATCGAGTCAACAAGCAGCGGAACAACTGCTTGAGATGTCCTTTGATGCTTCTTATAGATTCAATACGAATGATAGGATTCAGCTACATGTACTGGATCAAATGTTGTACGAACAGAAACTTCAACGGTCATTTGCCAATCAACAACCAGCAACGGCGGAGCAGAAGCCACCGACGACAACACGACCACCGTAG | 720 | 45.14 | MSSSKPKSQKPPLNYGSPCAACKFLRRKCLPDCIFAPHFPADQPQKFELVHKIYGASNTSKILNQLSYDLRDEAVKSLVYEAEARVNEPVYGCVGFIAILQEKLRQLQTELSATRRELSTYMVSKTPAANFSVPQSLQMPRDGSSSSSAMTGPLSENTRKSLYEPMPQRMTMDGRSSSQQAAEQLLEMSFDASYRFNTNDRIQLHVLDQMLYEQKLQRSFANQQPATAEQKPPTTTRPP | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54791489 | 54792208 | + | Lag0014050.1 | Lac1g3558 | 597129 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac1g3558 | 239 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 17 | 171 | - | - | |
Lac1g3558 | 239 | MobiDBLite | consensus disorder prediction | 133 | 182 | - | - | |
Lac1g3558 | 239 | Coils | Coil | 97 | 117 | - | - | |
Lac1g3558 | 239 | Pfam | Lateral organ boundaries (LOB) domain | 18 | 115 | IPR004883 | - | |
Lac1g3558 | 239 | ProSiteProfiles | LOB domain profile. | 17 | 118 | IPR004883 | - | |
Lac1g3558 | 239 | MobiDBLite | consensus disorder prediction | 133 | 164 | - | - | |
Lac1g3558 | 239 | MobiDBLite | consensus disorder prediction | 219 | 239 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g3558 | Lac-Chr1:54791489 | Lac3g0157 | Lac-Chr3:1085354 | 2.00E-36 | dispersed | |
Lac1g3558 | Lac-Chr1:54791489 | Lac8g0240 | Lac-Chr8:2655989 | 6.40E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23401 | PF03195 | LOB | 4.30E-38 | No_clan | Lac | TF |
Pathway information
