Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3558 ATGAGTTCCTCTAAACCCAAATCCCAAAAGCCTCCATTGAATTACGGCTCACCATGTGCAGCATGTAAATTTCTAAGAAGAAAATGTCTTCCAGACTGCATTTTTGCTCCACATTTTCCAGCAGACCAGCCTCAAAAATTCGAACTTGTACATAAAATTTACGGTGCCAGTAACACCTCTAAGATTCTTAACCAGTTGAGCTATGATCTGCGTGACGAGGCCGTTAAGTCTCTAGTCTACGAGGCAGAGGCTCGGGTGAATGAGCCAGTATATGGTTGCGTTGGTTTTATAGCAATTCTTCAAGAGAAGCTTAGACAGCTTCAAACTGAACTCTCTGCCACCCGGAGAGAGCTTTCAACTTACATGGTATCAAAGACACCAGCTGCAAACTTTTCGGTTCCGCAGTCATTGCAGATGCCTCGCGATGGTTCGTCGAGTTCGTCTGCAATGACTGGACCATTGAGTGAGAACACTAGAAAATCTTTGTATGAACCGATGCCGCAACGAATGACAATGGACGGTCGATCATCGAGTCAACAAGCAGCGGAACAACTGCTTGAGATGTCCTTTGATGCTTCTTATAGATTCAATACGAATGATAGGATTCAGCTACATGTACTGGATCAAATGTTGTACGAACAGAAACTTCAACGGTCATTTGCCAATCAACAACCAGCAACGGCGGAGCAGAAGCCACCGACGACAACACGACCACCGTAG 720 45.14 MSSSKPKSQKPPLNYGSPCAACKFLRRKCLPDCIFAPHFPADQPQKFELVHKIYGASNTSKILNQLSYDLRDEAVKSLVYEAEARVNEPVYGCVGFIAILQEKLRQLQTELSATRRELSTYMVSKTPAANFSVPQSLQMPRDGSSSSSAMTGPLSENTRKSLYEPMPQRMTMDGRSSSQQAAEQLLEMSFDASYRFNTNDRIQLHVLDQMLYEQKLQRSFANQQPATAEQKPPTTTRPP 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54791489 54792208 + Lag0014050.1 Lac1g3558 597129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3558 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 171 - -
Lac1g3558 239 MobiDBLite consensus disorder prediction 133 182 - -
Lac1g3558 239 Coils Coil 97 117 - -
Lac1g3558 239 Pfam Lateral organ boundaries (LOB) domain 18 115 IPR004883 -
Lac1g3558 239 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Lac1g3558 239 MobiDBLite consensus disorder prediction 133 164 - -
Lac1g3558 239 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3558 Lac-Chr1:54791489 Lac3g0157 Lac-Chr3:1085354 2.00E-36 dispersed
Lac1g3558 Lac-Chr1:54791489 Lac8g0240 Lac-Chr8:2655989 6.40E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23401 PF03195 LOB 4.30E-38 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3558 - - - 0.0