Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3581 ATGGCGCTTGTTTTGCACAAAGATTCATCAAATAAACAGATGGATACAAGCAAATACGTACGTTATACTCCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCAAAGCCCAGTTCTCTTAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAATATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCTTCCCGCCTCCAGAGTGTAAATCGAAAGCTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCTCATTTGGTTTATGAGAATGGATATATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTTGCGGTAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCGCGAGCCTGTGGTCTTGTTAGTCTAGAGCCGACAAAGGTTGCAGAAATTCTTAAAGATCGCCTTTCATGGTATCGTGACTGTCGCTGTCTTAATGTTTTAAGTGTAATCCCTACTGGAAATGGGGGAACAATTGAACTTATATATATGCAGACCTATGCTCCAACAACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTCTGTGAGAGGTCATTAACTTCTTCAAGTGGTGGCCCAGCAGGGCCTCCGCCATCTACTTTTGTGAGAGCTGAAATGCTTCCTAGTGGCTATTTAATACGAGCTTGCGAGGGCGGTGGATCAATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTACGAGTCATCCAAGATCCTCGCTCAGAAAATGACAATTTCTGCATTACGTCACATTAGACAAATTGCTCAAGAGACTAATGGAGAGATTCAATATAGCGGTGGACGTCAACCAGCTGTACTACGGACATTTAGTCAAAAACTTTGCAGGGGTTTCAATGATGCAGTTAATGGGTTTGCGGATGATGGTTGGTCACCTATGGGCAGTGATGGATTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCAGGATCCCAGTACAGCACGTCTATGTATCCCTCCTTTGGCGGAGGTGTGATGTGTGCAAAAGCATCGATGTTGCTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTCTGCTGCGAGTCTAAAAGCCAGTCCATATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCAAGCAGCCAGGTCATTTTGCCTCTTGCTCATACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGACTGGAGGGCCTTGCATTCTCCCCTGAAGACGTTGCGTTGGCCGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGAGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCTCTACTTCCTTCTGGGTTTCGTGTCATACCATTGGATCCTAATAAAACGGATGAACCTACTGCTGCTCGAACCTTGGACTTGGCCTCTACTCTTGAAGTTGGTGCCAATGCTGCACGTTCTGCTGGTGAAACTGATTTGAGCAGCTACAATCTTCGGTCAGTCTTGACTATTGCCTTTCAGTTCACTTTCGAGAATCACTTGCGGGAAAATGTGGCTGCTATGGCTCGACAATACGTTCGCAGTGTTGTGGGGTCTGTTCAGAGGGTTGCTATGGCCATTGCCCCATCACGGCTGAGTTCCAATATGGGATTAAAGCCCCTTCCTGGTTCTCCTGAAGCTCTTACTTTGGCTCGTTGGATTTGCAGAAGCTACAGGATTTATGTTGGAGCTGAGCTCCTTCAAGCCGATTCCCAGTCTGGGGATGCCATGTTGAAGCAGCTCTGGCACCACTCAGATGCAATCATGTGTTGCTCCGTCAAAACCAATGCATCTGCTGTTTTCACCTTTGCGAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTTGATGAAGCAGGTCGGAAGATTCTCTGTTCTGAGTTCCCCAAAATAATGCAGCAGGGATTTGCAAATCTTCCATCTGGTATATGCGTATCCAGTATGGGCCGTCCCATTTCTTACGAGCAAGCTGTTGCCTGGAAGGTTCTCAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATAAACTGGTCTTTTGTGTGA 2547 46.64 MALVLHKDSSNKQMDTSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTSSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTISALRHIRQIAQETNGEIQYSGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGLEDVTIVINSSANKFPGSQYSTSMYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPNKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLRENVAAMARQYVRSVVGSVQRVAMAIAPSRLSSNMGLKPLPGSPEALTLARWICRSYRIYVGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICVSSMGRPISYEQAVAWKVLNDDDSNHCLAFMFINWSFV 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55036298 55041590 - Lag0014073.1 Lac1g3581 597152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3581 848 Gene3D - 9 85 - -
Lac1g3581 848 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Lac1g3581 848 CDD START_ArGLABRA2_like 161 377 - -
Lac1g3581 848 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 848 IPR044830 GO:0003700(InterPro)
Lac1g3581 848 Pfam START domain 167 374 IPR002913 GO:0008289(InterPro)
Lac1g3581 848 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Lac1g3581 848 SUPERFAMILY Bet v1-like 167 378 - -
Lac1g3581 848 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Lac1g3581 848 MobiDBLite consensus disorder prediction 123 160 - -
Lac1g3581 848 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Lac1g3581 848 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289(InterPro)
Lac1g3581 848 SMART START_1 166 376 IPR002913 GO:0008289(InterPro)
Lac1g3581 848 MobiDBLite consensus disorder prediction 123 157 - -
Lac1g3581 848 Gene3D - 200 385 IPR023393 -
Lac1g3581 848 CDD bZIP 70 109 - -
Lac1g3581 848 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Lac1g3581 848 Coils Coil 83 107 - -
Lac1g3581 848 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Lac1g3581 848 Pfam MEKHLA domain 703 847 IPR013978 -
Lac1g3581 848 SUPERFAMILY Bet v1-like 414 604 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3581 Lac-Chr1:55036298 Lac9g2585 Lac-Chr9:44396202 0.00E+00 dispersed
Lac1g3581 Lac-Chr1:55036298 Lac10g1163 Lac-Chr10:9794037 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23402 PF01852 START 5.80E-49 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3581 K09338 - csv:101210154 1628.99