Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3582 ATGCCATTCTTTCAGCTTATGAATTATGGAGCAGTAGGAGAAAGGAAAGCTTTGAAAAAGCCTATGACAAGGTGGGTTTCACTTGGTGTGCACTACAACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCCGAATCTCAGAATCATTCTCCATCAGTCATAAATGGACTAAATCAACCGAGTGTCACAACCCCAAATCAGTATGTAACACCTCCACAAGTTGGAGCAGGGCATGCTATGGCACCCTCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATATTTTCTCCTTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGGCGGTTTCTCAAATCAAATAAAAATGAGAATCAACGAAATGAAGTGGCATCAGGTGATAGATCACAGTCCAATATAAATCTGAATTCTGATAAAAGTGATCTAGCTTCTTCAGAGAACTGA 720 42.78 MPFFQLMNYGAVGERKALKKPMTRWVSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAMAPSAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQRNEVASGDRSQSNINLNSDKSDLASSEN 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55052434 55058236 - Lag0014074.1 Lac1g3582 597153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3582 239 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 37 229 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac1g3582 239 MobiDBLite consensus disorder prediction 204 239 - -
Lac1g3582 239 MobiDBLite consensus disorder prediction 39 85 - -
Lac1g3582 239 MobiDBLite consensus disorder prediction 198 239 - -
Lac1g3582 239 Gene3D - 145 206 - -
Lac1g3582 239 ProSiteProfiles NF-YA/HAP2 family profile. 145 205 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 PRINTS CCAAT-binding transcription factor subunit B signature 179 202 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 PRINTS CCAAT-binding transcription factor subunit B signature 148 170 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 SMART cbf3 144 205 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 MobiDBLite consensus disorder prediction 163 182 - -
Lac1g3582 239 MobiDBLite consensus disorder prediction 55 82 - -
Lac1g3582 239 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 147 202 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 ProSitePatterns NF-YA/HAP2 subunit signature. 150 170 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3582 K08064 - - csv:101205549 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3582 Lac-Chr1:55052434 Lac6g3088 Lac-Chr6:48399045 3.70E-30 dispersed
Lac1g3582 Lac-Chr1:55052434 Lac9g2815 Lac-Chr9:46204186 1.60E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g2815 . 18 273 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.8 2.3e-60 229.9
Lac3g1358 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 1.9e-47 187.2
Lac1g3582 . 92 237 CCAAT-HAP2 Transcription Factor Family AT2G34720 55.4 1.1e-36 150.6
Lac1g3582 . 35 237 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.2 1.3e-49 193.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23403 PF02045 CBFB_NFYA 5.50E-26 No_clan Lac TF