Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3582 ATGCCATTCTTTCAGCTTATGAATTATGGAGCAGTAGGAGAAAGGAAAGCTTTGAAAAAGCCTATGACAAGGTGGGTTTCACTTGGTGTGCACTACAACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCCGAATCTCAGAATCATTCTCCATCAGTCATAAATGGACTAAATCAACCGAGTGTCACAACCCCAAATCAGTATGTAACACCTCCACAAGTTGGAGCAGGGCATGCTATGGCACCCTCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATATTTTCTCCTTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGGGGTTGTGGTGGGCGGTTTCTCAAATCAAATAAAAATGAGAATCAACGAAATGAAGTGGCATCAGGTGATAGATCACAGTCCAATATAAATCTGAATTCTGATAAAAGTGATCTAGCTTCTTCAGAGAACTGA 720 42.78 MPFFQLMNYGAVGERKALKKPMTRWVSLGVHYNPMTSSVHDYSDNGEADEQQKYSESQNHSPSVINGLNQPSVTTPNQYVTPPQVGAGHAMAPSAYPYPDPYYRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQRNEVASGDRSQSNINLNSDKSDLASSEN 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55052434 55058236 - Lag0014074.1 Lac1g3582 597153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3582 239 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 37 229 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac1g3582 239 MobiDBLite consensus disorder prediction 204 239 - -
Lac1g3582 239 MobiDBLite consensus disorder prediction 39 85 - -
Lac1g3582 239 MobiDBLite consensus disorder prediction 198 239 - -
Lac1g3582 239 Gene3D - 145 206 - -
Lac1g3582 239 ProSiteProfiles NF-YA/HAP2 family profile. 145 205 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 PRINTS CCAAT-binding transcription factor subunit B signature 179 202 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 PRINTS CCAAT-binding transcription factor subunit B signature 148 170 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 SMART cbf3 144 205 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 MobiDBLite consensus disorder prediction 163 182 - -
Lac1g3582 239 MobiDBLite consensus disorder prediction 55 82 - -
Lac1g3582 239 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 147 202 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac1g3582 239 ProSitePatterns NF-YA/HAP2 subunit signature. 150 170 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3582 Lac-Chr1:55052434 Lac6g3088 Lac-Chr6:48399045 3.70E-30 dispersed
Lac1g3582 Lac-Chr1:55052434 Lac9g2815 Lac-Chr9:46204186 1.60E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23403 PF02045 CBFB_NFYA 5.50E-26 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3582 K08064 - csv:101205549 365.155