Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3587 ATGAATAATCGTGCAATGGAACTTGGGAGGCCTGGGTCAGGCAAAAGGAGACTAAGGGACCTATTGCTTCAAAAGGATAATCGCTTCTGTGCAGATTGTCGTGCTTTAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGCGTTCACAGAAGCCTCGGTACACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAGTGATGATGAAATTGATGCCATGATAGAAGTTGGAGGCAATTCTTCCGCAAATGCAATTTATGAAGCCTTTATTCCTGACGGATATGCAAAACCTGGACCAGATGCCACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACAACGACAAAAGCAATATCCAAGCAAGCTTTTCTGCAAAGATTATGAACAGTTTCCGTTCAAATTCTTCACAAAAACCACATTTGCAGAAAGGTATGGTAGAATTTGTTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGACATGATGTCTAGCGATCCTTATGTAGTCTTGACTCTTGGACAACAGACTGTCCAGTCATCTATAATCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTAATGCTATCTGTACCTCAATGTTTTGGATCCATGAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAAATTGATCTCCAGCCCTTGATAACATCAGCAATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCACACGATAATGCTCTCATAACCGATAGCACTGTTAATATCGTCGATGGCAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGCCTCTTGAACAATAG 1002 40.02 MNNRAMELGRPGSGKRRLRDLLLQKDNRFCADCRALDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANAIYEAFIPDGYAKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNNDKSNIQASFSAKIMNSFRSNSSQKPHLQKGMVEFVGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGQQTVQSSIIRSNLNPVWNEELMLSVPQCFGSMKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALITDSTVNIVDGKVKQEISLKLQNVESGELDLELEWMPLEQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55122436 55127103 + Lag0014079.1 Lac1g3587 597158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3587 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Lac1g3587 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
Lac1g3587 333 CDD ArfGap 18 124 - -
Lac1g3587 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Lac1g3587 333 Gene3D Arf GTPase activating protein 3 135 IPR038508 -
Lac1g3587 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Lac1g3587 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Lac1g3587 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Lac1g3587 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Lac1g3587 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Lac1g3587 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 322 IPR035892 -
Lac1g3587 333 Pfam C2 domain 177 265 IPR000008 -
Lac1g3587 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Lac1g3587 333 CDD C2_ArfGAP 176 320 - -
Lac1g3587 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Lac1g3587 333 SMART C2_3c 178 273 IPR000008 -
Lac1g3587 333 Gene3D C2 domain 175 333 IPR035892 -
Lac1g3587 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0291 Lac-Chr10:2220391 Lac1g3587 Lac-Chr1:55122436 4.80E-33 dispersed
Lac1g3134 Lac-Chr1:51659176 Lac1g3587 Lac-Chr1:55122436 1.20E-29 dispersed
Lac1g3587 Lac-Chr1:55122436 Lac8g1626 Lac-Chr8:34247575 1.10E-27 dispersed
Lac10g0317 Lac-Chr10:2469204 Lac1g3587 Lac-Chr1:55122436 8.00E-23 transposed
Lac2g1309 Lac-Chr2:10886756 Lac1g3587 Lac-Chr1:55122436 1.10E-23 transposed
Lac8g2067 Lac-Chr8:39143231 Lac1g3587 Lac-Chr1:55122436 1.40E-89 transposed
Lac1g3587 Lac-Chr1:55122436 Lac10g1164 Lac-Chr10:9835566 4.60E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3587 K12486 - csv:101218116 612.838