Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3596 ATGGGGAAGGTTCAAATCCGTAAATTCTTGATTCTGTTACTACTTCTGATAATTTCTGGGTATGTACAAACTGGAGAATCCAAATCCAATTCCCTTTTCATTAACTGTGGCTCAAGTTCAAATGAAACTGTTGATGGCCGGAAATGGATTGGCGACCTGACTTCTGAAGGGAACTTTTCCGTGGGCAATCTTGGTGTTAATATCAATGCCTCCACAGCCACTTTAAACGGCGATTCAGTCTTTGAGCCGCTGTATAAAACTGCTCGGATATTTACGAATTCCCTAAACTACACTTTCAAAGGCGTCTGGGGTAATCATTTTGTTCGCCTCCATTTCTGCCCCTTTCCTTTTGAGAACTTCAATGTGAACGAGTCATCATTTTCTGTCTCAGCAAATGGTCTTAGATTGGTTTCAGAGTTCAGTGTTCCCAATGAGATTGCATATAAGAATATGGAGTTTCAACGTTCTGGGGTTAATTCAAGTTCATTCTCTTTGGTTAAAGAGTTCATTGTTGCTGTCAATTCTGAAGCATTTGTTCTTGAGTTCTCCCCTTCTGGGGGATCATTTGGGTTCATCAATGCTATTGAAATTGTCCCCCTGGTGGATGAGCTCTTTGCAGGTCCGATTGATAAGGTGGGTGGAAATGCTGTTAGTTTGAATGTCAGTGAAAGGGGAACTGAAACTATGTACAGATTGAATGTTGGAGGTCCGGAGGTCAAGCCTACTCAAGATTCAAATCTTTGGAGAATGTGGGAAGTGGACTCAAGTTATATGATTACAGCAGATGCTGGGTCTGAGATACATAACAGTTCTAATATAACATATGCTTCCATGAATGATTCCATTGTAGCTCCTCTCCCTGTGTATGAAACAGCCAGAACGATGTCCGAGAACGAAGTGCTCGAGAAAAGGTTCAACATGTCGTGGAAATTCGAAGTACATCCTGGTTTTGAGTATTTGATTAGATTGCATTTCTGTGAGCTGCTGTATGAGAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAACAGGACTGCAGTTGAGAGTTTTGATGTGTTTGTTAGAGCGGGGGGAATAAACAAAGCATATCATGTGGATTTTCTTGAACCAATATCATCTAAAATCAACACTCTCTGGATTCAATTAGGCCCTGATACAGCTGCAGGTGCTGCAGGAACAGATGCTCTCTTGAATGGTCTAGAAATCTTTAAGCTAAGTCAAAATGGAAATCTTGCGTACGTTGACAGGTTTAATGCCTTAGAGGAATCCACGGGAAACTCAAAATCTCAAATTCTTTGGATAGGCATTGGAGCAGGTTTAGCATCTGTTGTTTTCCTTGCTGTTATTACCATTCTCATCATCTATTTCTGCAGAATCCGTAGGGGGAATTTTACTAAGAAGAACTCTTCTAGGTGGAGAGCAGGATCCAGTCATGGGGCCACTGTCTCCAACACTTATGCTAGAGGGTCCTTGGGGGGAGGCCAAAGTGTATTTGGGACCTTGCCATCTACCAGAGTTGGCAAATGGTTTACATTAGCAGAGATTCTTGCAGCAACAGATAACTTTGATGAAGCTCTGCTGATTGGTGTTGGCGGTTTTGGTAAGGTCTACAGAGGGGAGATTGATGATGGTACTCTTGTGGCTATCAAGAGAGCCAACCCGCAATCTCAGCAGGGACTTGCCGAGTTCGAGACCGAAATTGAAATGCTTTCTAAACTTAGACATAGGCATCTGGTCTCCATGATCGGCTTTTGCGATGAGCAAAAGGAAATGATCTTGGTTTATGAGTATATGGGGAACGGCACCCTGAGAAGCCATCTCTTTGGTAGTGATCTCCCACCTCTGACTTGGAAGCAGCGATTGGAAGTGTGCATCGGTGCAGCCAGGGGACTCCATTACCTTCACACAGGAGCTGAGAGGGGAATAATCCACAGAGATGTGAAGACAACCAACATACTCTTGGATGAGAACTTTGTTGCAAAAATGTCTGACTTTGGTCTTTCAAAAACAGGTCCTGCTTTGGATCACACCCATGTTAGTACTGCAGTTAAGGGAAGCTTCGGCTATCTCGACCCGGAGTATTTCAGGCGCCAGCAGCTGAGTGAAAAATCTGATGTCTATTCTTTTGGTGTGGTATTGTTAGAAGTTGTTTGTGCACGAGCTGTTATAAACCCAAGCTTGCCTAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAACGCAAAAAGTTGCTGCACACCATCATCGACCCACATCTCAAAGACAAATACTGTCCTGAGTCTCTAAAAACATTTGGAGAGATAGCAGAAAAATGCCTTGCTGATGAAGGGAAGATTCGTCCAACAATGGGGGAAGTTCTATGGCACCTAGAATATGCTCTGCAACTCCATGATGCTTGGATCCGCACCAATGAAGCAGAAAGTTCTTGCACTGTTGACTTAGAAGGAGCACAGGCTGAAGAACAGAGGCAAGAGCTTGATGGGGAAGATGAAAGCTCCAACTTGAAAGCTTCAACCCCAACTGATCACTTATGCTAG 2547 43.31 MGKVQIRKFLILLLLLIISGYVQTGESKSNSLFINCGSSSNETVDGRKWIGDLTSEGNFSVGNLGVNINASTATLNGDSVFEPLYKTARIFTNSLNYTFKGVWGNHFVRLHFCPFPFENFNVNESSFSVSANGLRLVSEFSVPNEIAYKNMEFQRSGVNSSSFSLVKEFIVAVNSEAFVLEFSPSGGSFGFINAIEIVPLVDELFAGPIDKVGGNAVSLNVSERGTETMYRLNVGGPEVKPTQDSNLWRMWEVDSSYMITADAGSEIHNSSNITYASMNDSIVAPLPVYETARTMSENEVLEKRFNMSWKFEVHPGFEYLIRLHFCELLYEKARERVFKIYINNRTAVESFDVFVRAGGINKAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAYVDRFNALEESTGNSKSQILWIGIGAGLASVVFLAVITILIIYFCRIRRGNFTKKNSSRWRAGSSHGATVSNTYARGSLGGGQSVFGTLPSTRVGKWFTLAEILAATDNFDEALLIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMGNGTLRSHLFGSDLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPSLPKDQINLAEWAMKWQRKKLLHTIIDPHLKDKYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYALQLHDAWIRTNEAESSCTVDLEGAQAEEQRQELDGEDESSNLKASTPTDHLC 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55179870 55182416 + Lag0014088.1 Lac1g3596 597167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3596 848 Pfam Malectin-like domain 34 405 IPR024788 -
Lac1g3596 848 CDD STKc_IRAK 529 794 - -
Lac1g3596 848 Gene3D Phosphorylase Kinase; domain 1 501 598 - -
Lac1g3596 848 FunFam Receptor-like protein kinase FERONIA 225 408 - -
Lac1g3596 848 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524(InterPro)
Lac1g3596 848 Gene3D Transferase(Phosphotransferase) domain 1 599 818 - -
Lac1g3596 848 MobiDBLite consensus disorder prediction 814 848 - -
Lac1g3596 848 FunFam FERONIA receptor-like kinase 31 201 - -
Lac1g3596 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3596 848 PANTHER OS07G0166700 PROTEIN 511 800 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lac1g3596 848 SUPERFAMILY Protein kinase-like (PK-like) 502 795 IPR011009 -
Lac1g3596 848 FunFam receptor-like protein kinase FERONIA 495 598 - -
Lac1g3596 848 MobiDBLite consensus disorder prediction 821 835 - -
Lac1g3596 848 Gene3D - 28 200 - -
Lac1g3596 848 Gene3D - 224 408 - -
Lac1g3596 848 SMART serkin_6 523 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3596 848 Pfam Protein tyrosine and serine/threonine kinase 529 790 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3596 848 FunFam Receptor-like protein kinase FERONIA 599 813 - -
Lac1g3596 848 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3596 Lac-Chr1:55179870 Lac2g1300 Lac-Chr2:10838033 7.90E-192 dispersed
Lac1g3596 Lac-Chr1:55179870 Lac1g1768 Lac-Chr1:39199954 4.70E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85965 PF12819 Malectin_like 5.70E-32 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3596 - - - 0.0