Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac1g3597 | ATGCTCCCCAAAGAAGCAAAGGAAGAAGATAACAGAAAGAATGACAACAACAATGACGATGATGGAGATGAATGTGGTTTGACGCAAATAAAACGACGAGGGGTTATCTATGGATCTCATTTAGTACAAGGAAAAATGGATCATGGAATGGAGGACTATATTGTTGCCGAAGAACGATATGTCGATGACCACAAGCTGGGACTATTTGCAATTTTCGATGGCCACTCCGGTCGCGATGTTGCAGAGTACTTGCAGTGCCATCTGTTTGATAACATATTGAGCCAGTCTGGTTTCTGGGAAGACCCTGAAGAAGCAATCAGGAGAGCATATAAAGAAATAGATGATGAGATTTTGGCTAGAAAAGTGAGAAAGAGAGGAGGTTCCACAGCAGTCACTACTATACTAATTGATGGACAGAAGCTAATTGTCGCACACGTTGGCGACTCACGAGCAGTGATATGCAGAAATGGCTTGGCAAAACCGATTACAGTCGATCACGAACCAGAGAAGGAGAAGGAACTCGTCGAGAGCCGAGGCGGATTTGTTGTACAAATGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAGCAATGTCGAGAGCATTTGGAGATGCAAAGCTCAAAGAACACATCACTTCAGAACCAGATATCAGGATCCTGACAATTGACAATGAGACTGAATTCACCATTTTGGGCAGTGATGGCCTCTGGAAGGTGATGTCAAACCAGGAGGCTTGTGATTGCATCAAAGAAATGGCTATGGATGCTCAAAAGGCGTCAGAGGAGTTGATCAAAGAGGCACTGTCTAGGGAGAGCTACGATGACATCTCCTGCATTGTTGTTACCTTCCACTGA | 855 | 45.03 | MLPKEAKEEDNRKNDNNNDDDGDECGLTQIKRRGVIYGSHLVQGKMDHGMEDYIVAEERYVDDHKLGLFAIFDGHSGRDVAEYLQCHLFDNILSQSGFWEDPEEAIRRAYKEIDDEILARKVRKRGGSTAVTTILIDGQKLIVAHVGDSRAVICRNGLAKPITVDHEPEKEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDAKLKEHITSEPDIRILTIDNETEFTILGSDGLWKVMSNQEACDCIKEMAMDAQKASEELIKEALSRESYDDISCIVVTFH | 284 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 55182928 | 55184346 | - | Lag0014089.1 | Lac1g3597 | 597168 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac1g3597 | 284 | ProSiteProfiles | PPM-type phosphatase domain profile. | 36 | 283 | IPR001932 | - | |
| Lac1g3597 | 284 | CDD | PP2Cc | 35 | 283 | IPR001932 | - | |
| Lac1g3597 | 284 | SMART | PP2C_SIG_2 | 41 | 283 | IPR001932 | - | |
| Lac1g3597 | 284 | SMART | PP2C_4 | 26 | 281 | IPR001932 | - | |
| Lac1g3597 | 284 | Gene3D | - | 13 | 284 | IPR036457 | - | |
| Lac1g3597 | 284 | FunFam | Probable protein phosphatase 2C 39 | 28 | 284 | - | - | |
| Lac1g3597 | 284 | SUPERFAMILY | PP2C-like | 34 | 284 | IPR036457 | - | |
| Lac1g3597 | 284 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Lac1g3597 | 284 | PANTHER | PROTEIN PHOSPHATASE | 17 | 281 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Lac1g3597 | 284 | Pfam | Protein phosphatase 2C | 46 | 276 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2666 | Lac-Chr11:42623504 | Lac1g3597 | Lac-Chr1:55182928 | 6.30E-16 | dispersed | |
| Lac1g3597 | Lac-Chr1:55182928 | Lac2g1250 | Lac-Chr2:10223345 | 5.90E-83 | dispersed | |
| Lac1g3597 | Lac-Chr1:55182928 | Lac2g0725 | Lac-Chr2:5585682 | 2.90E-74 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac1g3597 | K14803 | - | csv:101211141 | 458.759 |