Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3623 ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAACATAAAGTAAAGAAGGAAACTGTAAATGACAATGAGGTTCAAGATGCACCTTCAAATGCAACAAAACAGAAAGTTGAGGTTGCCAAGCAATATATTGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCCGATGCCGATGTTTCTGAGGAAGACCAAATAAACGTGCTTAAATATTTAGAACAGAAAGAGACAGAATACATGCGTCTTCGTAGACATAAAATGGGTGTCGATGACTTCGAACTTTTGACAATTATAGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAACCACCGGTCATGTGTATGCAATGAAGAAGCTTAAAAATCTGAGATGCTTCGCAGGGGCCAGGTCAAGTCTATCTTGTAGCAAGATGATCTTCACTTCCTCCATGGTTGGACATAGTGGTAAAATGTCTAGTAGGTTCAACCTAGAGCTCACTACTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATATTGCTCCTTTCAGGATGAAGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACTGAGGATGAGGCTCGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTTACCGAGCAAGAAAATGTAATGGGGAAGAATGTCAGATCTTCTGCAGAGAATGATAGTCAGTTTAGCGTATCAAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGGACATTGGCTTATTCAGCTGTTGGAACGCCAGACTATATTGCCCCAGAAGTGTTATTGAGGAAAGGATATGGAATGGAGTGTGACTGGTGGTCCCTCGGTGCAATTATGTATGAAATGCTTGTGGGATTTCCACCTTTCTATTCTGATGACCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATCTGAGATTCCCAACAGAAGCCAAACTTTCCATTGAGGCTAAAGATCTAATTTGCAAACTTCTATGCAATGTTGAGCAAAGAATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGCTACACAATGGGATAAATTATATCAAATGGAAGCGGTCATCATCCCAGAGATCCATGATGAGTTAGATACTCGAAATTTTGAGAAGTATGAAGAGCTTGGCGTGCCAGGTCAAACTCCATCGAAGTCTGGTCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAATTTCGAAATTGTCAACGAACACCACTTGTCTGGCATTACTGAGATGAGGAAAAAGCCTAACAAGACCAAGAAACCATCTGTTACGACTCTATTTGGTACATCATTCATCATTCTTAAATATTCTGAATATGCAAATTGCTTGGTTCCATAA 1644 39.72 MDSARSWFQKFQHKVKKETVNDNEVQDAPSNATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKTTGHVYAMKKLKNLRCFAGARSSLSCSKMIFTSSMVGHSGKMSSRFNLELTTERNLLAEVDSAYIVKLYCSFQDEDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEQENVMGKNVRSSAENDSQFSVSKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKATQWDKLYQMEAVIIPEIHDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPNKTKKPSVTTLFGTSFIILKYSEYANCLVP 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55326436 55333537 - Lag0014115.1 Lac1g3623 597194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3623 547 Gene3D Transferase(Phosphotransferase) domain 1 327 451 - -
Lac1g3623 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3623 547 Gene3D Phosphorylase Kinase; domain 1 452 462 - -
Lac1g3623 547 SMART pkinase_C_6 434 498 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3623 547 ProSiteProfiles AGC-kinase C-terminal domain profile. 434 506 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3623 547 SMART serkin_6 106 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3623 547 Gene3D Phosphorylase Kinase; domain 1 176 214 - -
Lac1g3623 547 CDD MobB_NDR_LATS-like 40 101 - -
Lac1g3623 547 Gene3D Phosphorylase Kinase; domain 1 16 147 - -
Lac1g3623 547 FunFam Non-specific serine/threonine protein kinase 332 451 - -
Lac1g3623 547 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Lac1g3623 547 ProSiteProfiles Protein kinase domain profile. 106 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3623 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 501 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac1g3623 547 Gene3D Transferase(Phosphotransferase) domain 1 215 282 - -
Lac1g3623 547 FunFam Non-specific serine/threonine protein kinase 215 282 - -
Lac1g3623 547 Pfam Protein kinase domain 107 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3623 547 Pfam Protein kinase domain 327 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3623 547 CDD STKc_NDR_like 104 497 - -
Lac1g3623 547 SUPERFAMILY Protein kinase-like (PK-like) 87 480 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3623 Lac-Chr1:55326436 Lac4g1857 Lac-Chr4:37880167 4.00E-205 dispersed
Lac1g3623 Lac-Chr1:55326436 Lac2g0475 Lac-Chr2:3485174 9.40E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85966 PF00069 Pkinase 7.40E-57 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3623 K08790 - csv:101208438 937.176