Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3637 ATGGGGAAGAAGAAGAAGAGGGTTTCCTCTAAGGTATGGTGCTACTATTGCGACAGAGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTTCATAAAGAGTCGGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAATCAACAGACATTGAAATATATGGAATGCAAGGAATCCCACCTGATGTCTTGGCAGCACACTATGGAGAGGAGGAGGAGGAGTCCATATCAAAGGTGGCCAAAGTGGAGATGCCATCAACTCAGATGGTAGGCGGTGTGGTGCCCGGATCGCTGGGTATTGTATACCCTCCTCAATCAGGTTTAGCTGCAATGCAACCTATTTATGCTTCGACTGGACTTGCGCAGCCTAATGCCTGGCCTGTTCCACCTCGTCCCCAACCTTGGTTTCCTCCAAATTCAGCTGTTTCAATTCCTCCTCCAGCCCCATTGGGTTATGCTCAGCAGCCACTATTTCCTGTGCAGACAGCAAGGCCCCCAGTCCCAGTATCATCAACTCCTATGCTCCAGCCTTCACAAATAACGCCTCCTGGATTGCCTTCAACTACACCTTCAGTTTCTGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGACCTACCCATAGCTCTCCTTTTCCTTCATCTACGCTTTCAACAAGCATTGCTTTGACCTCGCCAGCAGAAATCAAGGGCTCAGTGAGTGCACATCTGGGCACTAACTCCTTTTCTACAATTGGCAATCAAGTTCCAAGCATTCCAGGTGGAATATTAAGCAATTCACACTCTTATGCCTCGGGACCAAATACAGGCGGTCCTTCTATTGGACCACCTCCTGTAATTGCGAATAAAGCTCCTACTCAGCCATCAACAAATGAAGTATATTTAGTTTGGGATGACGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATCGATGCAGCCATAGACAAAAGAATCTTGGAAAGCAGGCTTGCTGGCCGAATGCCATTTTAG 1125 47.11 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEEEESISKVAKVEMPSTQMVGGVVPGSLGIVYPPQSGLAAMQPIYASTGLAQPNAWPVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPVQTARPPVPVSSTPMLQPSQITPPGLPSTTPSVSVSQPLFPVVSNSHGPTHSSPFPSSTLSTSIALTSPAEIKGSVSAHLGTNSFSTIGNQVPSIPGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55483208 55488598 - Lag0014129.1 Lac1g3637 597208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3637 374 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lac1g3637 374 PANTHER ZINC FINGER PROTEIN 207 1 374 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lac1g3637 374 Gene3D Classic Zinc Finger 1 66 - -
Lac1g3637 374 CDD SUF4-like 13 92 - -
Lac1g3637 374 SMART c2h2final6 12 35 IPR013087 -
Lac1g3637 374 SMART c2h2final6 36 59 IPR013087 -
Lac1g3637 374 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
Lac1g3637 374 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23406 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3637 K27810 - csv:101206973 656.751