Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3681 ATGGAGAGCCATGGAACTAGTAGTTATTTCGTGGATGAGAAGGCTGTTCTCGTCGAGAACATTTTCTTCGACTTCCTCAAAAGTTTTCGCCTCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTCGCTCACCTTATGCGCTCCAATGATCTTCTTCACGTAGCAATCGCCGACGAATATCTGAGGTTTGAACCATACCTCAAGAACGCTTGCAAGCGATTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCTGTTTCTAAAAGGTTGAGAGAATTGACCACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTCGAACAACAATTCAAGTACACGGAGCCAACGATATGCATGAACCCAACCTGTTCGAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAAACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTTATTCTTCGCCATGAAATGGTCGAACGTGCTAGGGCTGGAGACACGGTCATCTTCACGGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGTGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAAAAACTCTGCAGTTGGACATGAAGGAATGAGGGGGCTACGAGCACTAGGAGTAAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGTAGAAGGGATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAGTTCACTACTGGAGAGCTTGATGAAGTTCAAAGAATGAGGAATACACCCGATTTCTTCAACAAACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATCCTGCTGATGCTGTTAGGTGGTGTCCACAAGTTAACTCACGAAGGCATTAACCTTCGAGGTGACATCAATGTCTGTATAGTAGGAGATCCAAGCTGTGCAAAATCTCAGTTTCTAAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCCGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCTGACAATGGCATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACATCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGCTACGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTCGTGTACGTGATGATAGATGATCCAGATGATCAAACGGATTACCACATTGCACACCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTTTCTCCTGCTTTTACTACTGCTGAGTTGAAGCGTTATATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGCTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCCGGAAGTAGGGTTGCCTATCGCATGACAGTCAGGCAGCTTGAGGCATTAATAAGGCTGTCCGAAGCAATCGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGCCATGTGCGTTTAGCAGTGACGTTACTGAAAACGTCAATAATCAGTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAATGGATGGAGGTGGAGATGGTAATAATAATGTCGATAATGGGCCTAATGAGGTTGATGCTGAACCTAGGAATGGTGCAACAGAGCCAACTTCTGAAAATGGTGGTTCTGAAAGTCAAAATAGGAAGAAGAAACTTTTCCTGAGTTATGAATATTTTCAGAGGGTTATCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATCTGTGATGCAAGAAGGAACTGGACTGGCGGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGGCTCAGCAGAACGAGAGAAATAGCTATAGCTCCATGAAGGAGGTACAAAAGGAAGTTAAAACAATTAAAGCTATCATTGAGAGTTTGATAGTAAGGGAAGGCCATTTGATAGTGGTAGATGAAGGGAGGCCGGTTGATGGCGTCGAAGGCGAACCATCGTTAGTAAAGGATAACAGGATTTTAGCTGTGGCTCCTAATTATGTCGTTGATTGA 2499 44.18 MESHGTSSYFVDEKAVLVENIFFDFLKSFRLNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMRSNDLLHVAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRDFDIRNRKKDADEDNQQFTTGELDEVQRMRNTPDFFNKLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFQEEMDGGGDGNNNVDNGPNEVDAEPRNGATEPTSENGGSESQNRKKKLFLSYEYFQRVIQALVMRLRQHEESVMQEGTGLAGMRQRDLIEWYVAQQNERNSYSSMKEVQKEVKTIKAIIESLIVREGHLIVVDEGRPVDGVEGEPSLVKDNRILAVAPNYVVD 832
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 55902180 55908246 + Lag0014173.1 Lac1g3681 597252
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3681 832 Pfam MCM OB domain 122 250 IPR033762 -
Lac1g3681 832 MobiDBLite consensus disorder prediction 671 712 - -
Lac1g3681 832 Pfam MCM AAA-lid domain 571 656 IPR041562 -
Lac1g3681 832 FunFam DNA helicase 149 200 - -
Lac1g3681 832 Pfam MCM N-terminal domain 21 115 IPR027925 -
Lac1g3681 832 Gene3D - 332 661 IPR027417 -
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 169 186 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 222 233 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 281 302 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 77 89 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 119 131 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Lac1g3681 832 SUPERFAMILY Nucleic acid-binding proteins 22 252 IPR012340 -
Lac1g3681 832 Gene3D - 10 118 - -
Lac1g3681 832 FunFam DNA helicase 712 832 - -
Lac1g3681 832 Pfam MCM6 C-terminal winged-helix domain 715 830 IPR041024 -
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 447 461 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 526 534 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 475 488 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 387 402 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac1g3681 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 499 511 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac1g3681 832 FunFam DNA helicase 331 661 - -
Lac1g3681 832 Gene3D - 122 250 IPR012340 -
Lac1g3681 832 ProSiteProfiles MCM family domain profile. 346 552 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac1g3681 832 SMART mcm 118 657 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac1g3681 832 CDD MCM6 349 655 - -
Lac1g3681 832 Gene3D - 712 832 - -
Lac1g3681 832 Pfam MCM P-loop domain 334 556 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lac1g3681 832 ProSitePatterns MCM family signature. 455 463 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Lac1g3681 832 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 17 774 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER)
Lac1g3681 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 657 IPR027417 -
Lac1g3681 832 Gene3D - 149 200 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3681 Lac-Chr1:55902180 Lac4g1433 Lac-Chr4:32762103 4.20E-97 dispersed
Lac1g3681 Lac-Chr1:55902180 Lac7g1551 Lac-Chr7:17284273 1.40E-84 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3681 K02542 - csv:101219775 1497.26