Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac1g3684 ATGGCTGCAGAACCAGCAGCTTGCCATATGAAATTCCTTCTCGCCTCTCTAACGCTTGCGCTGCTCCTCCTTCCTTACGTCTCCTCCCACTCTCTGTCCCTCAGGCTCAAGGCACAAGCTTCTCTTCTGGTTTCCATCAAACAGTCTTTTGATCAACCCACTCCCTTTCTCCTGGACTGGAATGCTTCAAATTACTCCTCCCTCTGCTCTTGGACTGGAATTCAATGCGATGACACCAACAGATCACTGGTGTCGCTCGACATTTCCAATTACAACATCTCCGGGAACTTCCCCCCTCTAATTCACAAGCTAACCAAGCTTCGCTCTCTCAACATTTCCAACAATCAGTTCAGCGGACAACTCCCTTGGGAGTTTTCTCAGCTGAAGCTGCTGCAGGTTTTTGATGCTTACAACAACAATTTCACTGGGCCGCTCCCCACAGGCGTCCCTCAACTTCCCAGTCTAAAGCACTTAAATCTTGGCGGGAATTTCTTCAGCGGTGGAATCCCTCGGAGCTATGCTGATATGGGGAAGCTCACTTTTCTGTCGCTTGCCGGCAATGAGTTGAGCGGTCCCATTCCCAGTGAGCTCGGTAATCTTACCAATCTTCAGAAGCTTTATTTGGGATACTTCAATGAGTTTGAGGGTGGAATACCCTCTCAACTCGGAAAACTTGTGAATTTGAATCATCTCGACCTCGCCAGTTGTTGTTTACGAGGTCCAATCCCACCCGAGTTGGGGAACCTCAACAAGTTAGACACTCTCTTCTTGCAGACAAATCAGCTCACTGGTTCAATTCCTCCTCAATTAGGCAACTTGAGCAGCTTGGTTTCGCTTGACCTCTCCAACAACGAGTTAACAGGAGAGATCCCCCTCGAATTTGCAAACCTCCGCCAGCTTTCGCTCTTGAACCTATTCATCAACAAGTTTCATGGAGAGATTCCTCATTTTCTGGCCAATCTTCCCAAGTTGGAGGTTTTGAAGGTGTGGCAAAATAACTTCACAGGAGCCATTCCAGCAAAGCTAGGTGAGAATGGGAGGCTGACGGAGCTTGACTTGTCCACCAACAAGCTCACAGGACTGGTCCCGGAGCGTCTGTGCTTGGGAGGAAGGCTGAGGATCTTGATTTTACTGAACAATTTTCTGTTTGGGGCTGTGCCACGTGATCTGGGGCGATGCGAGACGCTTGTAAGAGTTCGAATGGGTCAGAACTATTTGACGGGATCAATCCCAGAGGGGCTGCTTTACTTGCCACAGCTCTCCCTTATGGAACTGCAGAACAACTACCTGAGCGGACCCCTACCACAAGACATGCGCCCACTCCCATCCAAACTCGGCCTGCTAAACCTTTCCAACAATCGCTTCTCTGGATCCCTTCCCACCTCCATCGGGAACTTCACATACTTGCAGAATCTGCTTTTGAGCGGAAACCATTTCTCCGGGGACATTCCTTCTGAAATAGGCAAGCTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACTTCTCCGGTAGAATCCCGCCTGAATTGGGTACTTGTGTCTCCCTCACTTACCTGGATTTGAGCCTCAATCAGCTAACCTCTCCAATCCCAGTTCAAATTTCACAGATTCGCATCTTAAATTATCTAAACTTGTCTTGGAACCATCTGAACCAGAGCCTTCCCAAGGAAATTGGGTCCATAAAGAGCTTGACCTGTGCGGACTTTTCCCACAATAACTTGTCTGGTCCTATACCCGAAACTGGGCAGTTTTTACTCTTCAATTCCACATCCTTCGTGGGCAACCCTCAACTGTGTGGATCCTCGTTGAATCCCTGCAACCAGTCAGCATCAAAGTCTCAAACCCCAACAGGCGCCAATTCCAAAGCTGTTGGGAAATACAAGCTTGTGTTTGCGTTGGGACTATTGATGTGTTCGGTGATATTTGCAGCTCTGGCAATCATTCAGACAAGGAAGGCGAAGAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGCAAGGACATCATAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGTGGAGCTGGAATTGTGTACAAAGGAATCATGCCAAGTGGAGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAAACAAGGGATCCTCCCACGACAACGGTCTGTCGGCGGAGATACAGACGCTGGGAAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCGAATAAGCAGACGAACCTGCTGGTTTACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCATGGGAAGAGGGGTTGTTGTCTAAAATGGGGAACCAGGCTGAAGATAGCTATAGAAGCAGCCAAAGGGCTTTGCTATTTGCACCATGACTGTTCGCCGCTCATAATCCATAGGGACGTCAAGTCCAACAACATTTTGCTCAACTCAGATTTCGAGGCTCATGTAGCGGATTTCGGGTTGGCCAAGTTCTTGCAAGACAACGGAACATCGGAGTGCATGTCCGTCATTGCCGGTTCTTATGGGTATATTGCTCCAGAATATGCCTACACATTAAAGGTGGATGAAAAAAGTGATGTTTACAGTTTTGGAGTGGTGTTGCTGGAGCTTATAACAGGACGAAAGCCTGTGGGCAATTTTGGGGAAGATGGTCTAGACATTGTTCAATGGACTAAGATTCAAACCAACTCTACGAAAGAAGGAGTTGTTAAGATATTGGATCAAAGGTTAAGTAACATACCAATAAATGAAGCAAAGCAAGTATTTTTTGTTGCTATGTTATGCGTTCAAGAACACAGCGTGGAGCGGCCAACAATGAGAGAAGTGCTTCAAATGCTTGCACAAGCCCACCAACCAGATACCTTCCACATGCATTGA 2895 47.18 MAAEPAACHMKFLLASLTLALLLLPYVSSHSLSLRLKAQASLLVSIKQSFDQPTPFLLDWNASNYSSLCSWTGIQCDDTNRSLVSLDISNYNISGNFPPLIHKLTKLRSLNISNNQFSGQLPWEFSQLKLLQVFDAYNNNFTGPLPTGVPQLPSLKHLNLGGNFFSGGIPRSYADMGKLTFLSLAGNELSGPIPSELGNLTNLQKLYLGYFNEFEGGIPSQLGKLVNLNHLDLASCCLRGPIPPELGNLNKLDTLFLQTNQLTGSIPPQLGNLSSLVSLDLSNNELTGEIPLEFANLRQLSLLNLFINKFHGEIPHFLANLPKLEVLKVWQNNFTGAIPAKLGENGRLTELDLSTNKLTGLVPERLCLGGRLRILILLNNFLFGAVPRDLGRCETLVRVRMGQNYLTGSIPEGLLYLPQLSLMELQNNYLSGPLPQDMRPLPSKLGLLNLSNNRFSGSLPTSIGNFTYLQNLLLSGNHFSGDIPSEIGKLRNLLKLDMSRNNFSGRIPPELGTCVSLTYLDLSLNQLTSPIPVQISQIRILNYLNLSWNHLNQSLPKEIGSIKSLTCADFSHNNLSGPIPETGQFLLFNSTSFVGNPQLCGSSLNPCNQSASKSQTPTGANSKAVGKYKLVFALGLLMCSVIFAALAIIQTRKAKKKSSSWKLAAFQKLEFGSKDIIECIKENNIIGKGGAGIVYKGIMPSGEQVAIKKLLAINKGSSHDNGLSAEIQTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGCCLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDNGTSECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWTKIQTNSTKEGVVKILDQRLSNIPINEAKQVFFVAMLCVQEHSVERPTMREVLQMLAQAHQPDTFHMH 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55936633 55940561 - Lag0014176.1 Lac1g3684 597255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac1g3684 964 SUPERFAMILY L domain-like 290 608 - -
Lac1g3684 964 SUPERFAMILY Protein kinase-like (PK-like) 676 952 IPR011009 -
Lac1g3684 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 956 IPR050647 -
Lac1g3684 964 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 213 318 - -
Lac1g3684 964 Gene3D Ribonuclease Inhibitor 194 293 IPR032675 -
Lac1g3684 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Lac1g3684 964 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 325 611 - -
Lac1g3684 964 Gene3D Ribonuclease Inhibitor 317 616 IPR032675 -
Lac1g3684 964 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 649 757 - -
Lac1g3684 964 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Lac1g3684 964 FunFam Leucine-rich repeat receptor-like protein kinase 37 195 - -
Lac1g3684 964 Pfam Leucine Rich Repeat 469 490 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 492 514 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 447 466 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 516 536 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 347 367 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 275 297 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 252 273 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 154 172 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515(InterPro)
Lac1g3684 964 SMART LRR_typ_2 176 200 IPR003591 -
Lac1g3684 964 SMART LRR_typ_2 152 175 IPR003591 -
Lac1g3684 964 SMART LRR_typ_2 538 562 IPR003591 -
Lac1g3684 964 SMART LRR_typ_2 490 514 IPR003591 -
Lac1g3684 964 SMART LRR_typ_2 346 369 IPR003591 -
Lac1g3684 964 SMART LRR_typ_2 104 127 IPR003591 -
Lac1g3684 964 SMART LRR_typ_2 273 296 IPR003591 -
Lac1g3684 964 SMART LRR_typ_2 225 249 IPR003591 -
Lac1g3684 964 SMART LRR_typ_2 321 345 IPR003591 -
Lac1g3684 964 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Lac1g3684 964 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 758 964 - -
Lac1g3684 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac1g3684 964 SMART serkin_6 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3684 964 Pfam Protein kinase domain 682 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3684 964 ProSiteProfiles Protein kinase domain profile. 680 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac1g3684 964 SUPERFAMILY L domain-like 65 363 - -
Lac1g3684 964 Gene3D Phosphorylase Kinase; domain 1 645 757 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1053 Lac-Chr1:27521483 Lac1g3684 Lac-Chr1:55936633 2.90E-59 dispersed
Lac1g3684 Lac-Chr1:55936633 Lac5g1860 Lac-Chr5:36849506 2.20E-150 dispersed
Lac1g3684 Lac-Chr1:55936633 Lac1g2730 Lac-Chr1:48509523 1.00E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85967 PF00069 Pkinase 6.10E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac1g3684 - - - 0.0