Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0004 ATGGCAGTGAATTTAGGTCTAGTGGTTGGATCTCAGAATCAAAATGAACTTATGGTTATCCATCGGGATCGCGAATCTGTTCCTATTAGTTTGCAGCATGTAAGTGGACACATATGCCATATATGCGAAGATGATGTGGGGGTTAATATTGATGGAGAAGTTTTTGTAGCCTGCGACGACTGTGCCTTTCCCATCTGCAAGACATGTTACGAGTACGAGCGCAGCGAAGGAAGTCAAGTATGTCCTCAGTGCAACACAAGATTGAAGCGTCTCAAGGGTCACGCCCGAGTAGAAGGCGATGAAGAAGAAGATGATATCGATGACCTGGAGAATGAACTCAATTATAGCGGACGCCTTCCTGGGCAAATTAGCTGCGGTGCCCCTAATTCCAATATTCATCAGGTTGGTGCCATTCAATTAGGCATGGAGCCATGTGACAAGAGTCTCCATCCCTTTGGTGCTCATAGTTATGGTAGTACAATGGAGAATTGGAATGGAAAACAAGAAAGGTGGAGTGGAGATAATAGCAAAAACTGGGAGATCATGAATAAAGGCGATGATGTTTTGGACCCTCCCTTACAGACTTTGTCGAGAAAGGTACCAATTTCATCAAGGCAGATAAACCCATACCGCATGATCATCATCATTCGACTGGTTGTTCTCGGGTTCTTTCTCCATTATCGAGTAACTAATCCTGTTTATGATGCATATGCATTGTGGCTCATATCTGTAATTTGTGAGATTTGGTTTGCACTTTCGTGGATTTGCGGTCAATTTTCAAAGTGGCTCCCTGTTGAGAGGGAAACATATATGGACAGATTATCTTTAAGATATGAGAGAGAAGGGCAGCCTTCTCAGCTCTCTCCGGTGGACATTTTTGTCAGTATAGTGGATCCATCCAAAGATCCCCCATTGGTGATTGCAAACACAGTGCTTTCCATCCTTGCAGTGGATTACCCTAATGATAAGGTTTCATGTTATGTTTCTGATGATGGTGCAGCCATGCTTACATTTGAGGTGCTCTCTGAAACCTCTGAATTTGCTAGGAAATGGGTCCCTTTCTGCAAAAAGTACAATCTTGAGCCTAGGGCACCAGAATGGTATTTTTCTAAGAGCTTAGATTACTTCAATGATAAGGTTCTCCCATCATTCGTGAAGGAAAGGAGGGCCATGAAGAGAGAATACGAGGAATTCAAGGTTAGAATCAATTCTTTGGTTGTGAAAGCTCGTATGGCCCTGAAGGAAGGACAAACAATGCAAGATGGAGGTCTATGGCCCGGTAACGATGTCCGCGATCACCCCGGGATGATTCAGATTCTTCTTGGCCAAGATGGAGGATATGAAAATGATGATCAGAGTGAGTTGCCACGCCTAGTGTACGTCGCTAGAGAAAAAAGGCCTGGCTTTAACCACCAAGAAAAGTCTGGAGCTTTGAATGTGCTTGTCAGAGTGTCTGCTGTGTTGAGTAATGCACCTTACTTGTTGAAGTTAGACTGCGAGAATTATATAAATAATAGCAAGGTTCTTAGAGAAGCAATGTGCTTCATGATGGATCCACAACTGGGAAAGCGACTGTGCTACGTGCAGTTCCCACGTGGCAATGCAAAGAGGAATAGCGTATTTGGTAACATTACGATGAGAGGTTTAGATGGAATCCAAGGGCCTGTATGTGTGGGAACTGGGTGTGTCTTCCGAAGGCAGGCTCTATATGGCTATGATGCACCCGCACCCAGAAAAAGGAAGGCAACAACAAGGACACAGGGCTACTGGTGTTGCGGGTGGTGTTCTAGAAAGACAACTAAGGAGACCAGCTGCAGAAGTGAATTGGAGAGAAATTCAAGAGAGGGAGATCCCGGAACTGAGTGTGCTTTGATGGGTATGGAAAAGACATTTGGGCAGTCTCCTGTTTTTGTATCATCTATTCTGTCTCTGCTTGAAGATGGTGGAATACAAACACCAACACCAACACCAACACCAACAGGTGCTACCTCAGCATCTTTGCTTAAGGAAGCTCTCCACGTCTCTGGTTGTGGCTATGAAGATAGAACGGAATGGGGTAGAGAGGTTGGGTGGATCTATGGATCAGTTACAGAGGACATGTTGACGGGTTTTAAGATGCACTGCAGTGGATGGCGATCCGTGTACTGTGCCCCTGCAACGCCTGCGATTGAAGGATCTGCCGCCATGAATCTTTCTGGCCGTCTGAATCAAGTCTTCCGCTTGGCCCTTGGTTCCATGGAAATATTTTTTACTAGGCATTGCCCTCTCTGGTATGGCTATGGAGGAGGTTTGAAGTGGTTCCAACGACTTTCCTACATAAACGCCATTATGTATCCCTGGACGTCGATACCATTGTCGGCTTATTGCACTCTACCAGCCGTCTGCTTGGTGACAGGGAAATTTATGTTTCCGGAGCTGGGTCGTGTGGGTAGCTTGTGCTTTCTGTCCCTTTTCCTATGCACCCTGGCGACTGCTATGCTGGAAATGAGATGGAGTGGAGTGGGTATTGATGAATGGTGGAGAAATCAACAATTCTGGGTAATTGGAGGGGTTTCAGGACATCTGGTTGCCGTGTTTCAAGGGCTGTTAAAGGTATTACTTGGGGTCGATACAAACCTTGCAAATAAATGGACCACATTACTCATCCCGCCAACAACCCTGCTGATTATAAACTTGATAGGAGTTGTGGCTGGAGTTTCAAATGCTATTAATAACGGACATGAATCATTGGCGCCGTTGCTCGGTAAGCTCTTCTTTGCGTTATGGGTCATTGTGCACCTCTATCCTTTCTTCAAGCCTCTACTGGGTCGGCACAACAACACTCCCACAATTGCAATAGTTTGGTCAATCTTGCTCGCCTTCATCTTCTCCCTGTCGTGGGTTCCCATACATCCACTTTTGCACAACCCAAATGGTCCTCTGCTACAGGAATGTGGCCTGGAATGTAATTAA 2952 45.53 MAVNLGLVVGSQNQNELMVIHRDRESVPISLQHVSGHICHICEDDVGVNIDGEVFVACDDCAFPICKTCYEYERSEGSQVCPQCNTRLKRLKGHARVEGDEEEDDIDDLENELNYSGRLPGQISCGAPNSNIHQVGAIQLGMEPCDKSLHPFGAHSYGSTMENWNGKQERWSGDNSKNWEIMNKGDDVLDPPLQTLSRKVPISSRQINPYRMIIIIRLVVLGFFLHYRVTNPVYDAYALWLISVICEIWFALSWICGQFSKWLPVERETYMDRLSLRYEREGQPSQLSPVDIFVSIVDPSKDPPLVIANTVLSILAVDYPNDKVSCYVSDDGAAMLTFEVLSETSEFARKWVPFCKKYNLEPRAPEWYFSKSLDYFNDKVLPSFVKERRAMKREYEEFKVRINSLVVKARMALKEGQTMQDGGLWPGNDVRDHPGMIQILLGQDGGYENDDQSELPRLVYVAREKRPGFNHQEKSGALNVLVRVSAVLSNAPYLLKLDCENYINNSKVLREAMCFMMDPQLGKRLCYVQFPRGNAKRNSVFGNITMRGLDGIQGPVCVGTGCVFRRQALYGYDAPAPRKRKATTRTQGYWCCGWCSRKTTKETSCRSELERNSREGDPGTECALMGMEKTFGQSPVFVSSILSLLEDGGIQTPTPTPTPTGATSASLLKEALHVSGCGYEDRTEWGREVGWIYGSVTEDMLTGFKMHCSGWRSVYCAPATPAIEGSAAMNLSGRLNQVFRLALGSMEIFFTRHCPLWYGYGGGLKWFQRLSYINAIMYPWTSIPLSAYCTLPAVCLVTGKFMFPELGRVGSLCFLSLFLCTLATAMLEMRWSGVGIDEWWRNQQFWVIGGVSGHLVAVFQGLLKVLLGVDTNLANKWTTLLIPPTTLLIINLIGVVAGVSNAINNGHESLAPLLGKLFFALWVIVHLYPFFKPLLGRHNNTPTIAIVWSILLAFIFSLSWVPIHPLLHNPNGPLLQECGLECN 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 87483 92217 - Lag0036642.1 Lac2g0004 597268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0004 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 210 951 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lac2g0004 983 Coils Coil 92 112 - -
Lac2g0004 983 CDD mRING-HC-C4C4_CesA 37 87 - -
Lac2g0004 983 Pfam Cellulose synthase 290 973 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lac2g0004 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 293 570 IPR029044 -
Lac2g0004 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 432 574 IPR029044 -
Lac2g0004 983 SUPERFAMILY RING/U-box 25 111 - -
Lac2g0004 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Lac2g0004 983 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0004 Lac-Chr2:87483 Lac3g0229 Lac-Chr3:1609822 0.00E+00 dispersed
Lac2g0004 Lac-Chr2:87483 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0004 K10999 - osa:4334710 1246.11