Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0017 ATGCTGCATCTTCTTCTTCATCTGATTCTATTATCATCTTCTGCCGCGGTTGACACCAAGCCCGGATGCCCTTCCAACTGTGGAAACGTCACCGTTCCATACCCTTTCGGCATCGGCCCTGGTTGTTACATGGCCACCGGCTTTGACGTAACTTGCAATTCTTCCTACCATCCTCCTTTACTCTTCCTCGGCACTTCCAACCTTCAAGTTCAGCAAATTTCTCTAACCAACCTCCGCATTCGCAACTCCGTCTCTTACAACTGCTACAACCAAGCTGGGGCTCTCATCGGCAGATCCAGCTCTTGGATCAACTTGGGCCGTCTCCCTTTCTACTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCTTAGCCTTGATCTCTGGCTCCCAGGGCCTCTCCTACACCGGCGGATGCATCTCCCTCTGCTCCAACAAGGAAACCGTCATCAATGGCTCTTGCTCTGGAATCGGCTGCTGCCAGACCGCCGTCCCCCGAGGCCTCAAGCGCTTCCAGAGCAACATCGGGAACCTCAACAACCACACCTTAACCTGGCAGTACAATCCTTGTAGCTACGCCTTCCTGGTTGACCAAGACCGCTACACCTTCGAGACGTCTGATCTGGCCGATCCCAACTTCCTGTCCACCATTACAAGCTTGCCGGTGGTTCTGGACTGGGTGGTGGGTAATCAGACGTGTGAAGAGGCTCGGAAAGACTCGTCAGCGTATGTTTGCCAGGCCAATTCCGAATGTTACGGTTCAGAGAGTGGAAGCGGCTATCAATGTCGGTGCAGCCAAGGCTACCAAGGGAACCCATATCTCACTCCTGGATGCCAAGACATTGACGAGTGCGATGGCCCCAACAGCCCTTGCGAAGGCATTTGCGTGAACACCCCTGGCAGTTATTACTGTTCATGCCCCCACGACGCCTATGGTGACGGTAGGAAGGACGGCAAGGGCTGCATCACCAAAACTAAGCAATTTCCGCTTATTCACCTCACTCTCGCTCTTGGTTCCGGTCTCCTATTTCTTATCGTCACTGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAACCTCATTAAACTCAGACAGAAATTCTTCCACCAGAACGGGGGCTTCTTACTGCGCCAACAGTTATCACAACACGAAGGCGCTGTTGAATCCACAAAAATCTTCTCAGCGGAGGAGCTAGAGAAAGCGACCGACAACTATGCTGAGACTAGAATCCTGGGCAGAGGCGGAAACGGGACTGTGTACAAAGGAATTCTACCCGACGGCAGCATAGTCGCCATTAAGAAGTCCAAGATAGCGGATGAAAGCCAAATCGAACAGTTCATCAACGAAGTCATAATTCTGGCCCAAATCAACCACCGGAATGTGGTGAAGCTCATGGGATGCTGCCTCGAGACGGAGGTTCCTCTGCTCGTCTACGAGTTCGTATCGAATGGGACTCTACACAGCCATATTCATGAGAAGAACAGCTTCAATAACAATTCCATGTCTTGGGAAAACCGTTTGAGAATAGCAACTGAAACTGCCGCAGCTCTTTCGTACCTGCACTCGGCAGCATCCACACCCATAATTCACAGAGACGTGAAGTCGGCAAACATATTGTTGGACAAGAAATGCACGGCGAAGGTAGCCGATTTTGGAGCATCGAGGTTTATCCCAATGGATAAGTCGCAGATAACGACACTGGTTCAAGGGACGTTCGGTTACCTAGACCCGGAATATTTCCAAACGAGTCAATTGACAGAGAAGAGCGATGTGTACAGCTTTGGGGTGGTGCTGGTGGAGCTGTTAACGGGGGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAAAGAAACCTGTCGTCGTATTTTGTGGCGTCAGTGCGGCAGAAGAGGCTGTTTAGGGTGGTGGAGGGGAGGGTGTTGAGGGAAGGGAAGAGAGAGCAGCTGGTGGGAATGGCGGAGCTGGCGAGGAGGTGCCTGAAGCTGAAGGGGGAAGAGAGGCCGACGATGAGAGAAGTGGTGTCGGAGCTGGAGAGGTTGAAAGGGGATGATGGAAGAAACCGAGAGGAAACGGAGAGTTTGCTGGAACAGGAACAAGAAGGAGAGGCCTCAGACTCAGAGGATCTATACCCCCCATGGATACCCACCTCCATCGGATCCTCCACATCCCAACCCTCACGTTGA 2190 52.28 MLHLLLHLILLSSSAAVDTKPGCPSNCGNVTVPYPFGIGPGCYMATGFDVTCNSSYHPPLLFLGTSNLQVQQISLTNLRIRNSVSYNCYNQAGALIGRSSSWINLGRLPFYFSTTNKFTVIGCDTLALISGSQGLSYTGGCISLCSNKETVINGSCSGIGCCQTAVPRGLKRFQSNIGNLNNHTLTWQYNPCSYAFLVDQDRYTFETSDLADPNFLSTITSLPVVLDWVVGNQTCEEARKDSSAYVCQANSECYGSESGSGYQCRCSQGYQGNPYLTPGCQDIDECDGPNSPCEGICVNTPGSYYCSCPHDAYGDGRKDGKGCITKTKQFPLIHLTLALGSGLLFLIVTATWLYFTIKKRNLIKLRQKFFHQNGGFLLRQQLSQHEGAVESTKIFSAEELEKATDNYAETRILGRGGNGTVYKGILPDGSIVAIKKSKIADESQIEQFINEVIILAQINHRNVVKLMGCCLETEVPLLVYEFVSNGTLHSHIHEKNSFNNNSMSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDKKCTAKVADFGASRFIPMDKSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLVELLTGELPVSFERSESQRNLSSYFVASVRQKRLFRVVEGRVLREGKREQLVGMAELARRCLKLKGEERPTMREVVSELERLKGDDGRNREETESLLEQEQEGEASDSEDLYPPWIPTSIGSSTSQPSR 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 186975 189322 - Lag0036655.1 Lac2g0017 597281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0017 729 ProSiteProfiles Protein kinase domain profile. 407 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0017 729 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 691 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac2g0017 729 ProSiteProfiles EGF-like domain profile. 282 315 IPR000742 -
Lac2g0017 729 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 297 308 IPR000152 -
Lac2g0017 729 MobiDBLite consensus disorder prediction 678 696 - -
Lac2g0017 729 Pfam Calcium-binding EGF domain 282 311 IPR049883 -
Lac2g0017 729 SUPERFAMILY EGF/Laminin 280 325 - -
Lac2g0017 729 SUPERFAMILY Protein kinase-like (PK-like) 388 680 IPR011009 -
Lac2g0017 729 ProSiteProfiles EGF-like domain profile. 239 281 IPR000742 -
Lac2g0017 729 ProSitePatterns Calcium-binding EGF-like domain signature. 282 306 IPR018097 GO:0005509(InterPro)
Lac2g0017 729 Pfam Protein kinase domain 407 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0017 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0017 729 Pfam Wall-associated kinase 154 230 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Lac2g0017 729 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Lac2g0017 729 SMART egf_5 234 281 IPR000742 -
Lac2g0017 729 SMART egf_5 285 324 IPR000742 -
Lac2g0017 729 FunFam Wall-associated receptor kinase 2 377 482 - -
Lac2g0017 729 FunFam Wall-associated receptor kinase 2 483 703 - -
Lac2g0017 729 Gene3D Phosphorylase Kinase; domain 1 381 482 - -
Lac2g0017 729 Gene3D Laminin 285 325 - -
Lac2g0017 729 CDD EGF_CA 282 310 - -
Lac2g0017 729 CDD STKc_IRAK 413 682 - -
Lac2g0017 729 Gene3D Laminin 233 284 - -
Lac2g0017 729 FunFam Wall-associated receptor kinase 2 233 280 - -
Lac2g0017 729 MobiDBLite consensus disorder prediction 678 729 - -
Lac2g0017 729 Pfam Wall-associated receptor kinase galacturonan-binding 23 80 IPR025287 GO:0030247(InterPro)
Lac2g0017 729 SMART egfca_6 282 324 IPR001881 GO:0005509(InterPro)
Lac2g0017 729 SMART serkin_6 407 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0017 729 Gene3D Transferase(Phosphotransferase) domain 1 483 706 - -
Lac2g0017 729 FunFam Fibrillin 2 281 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0017 Lac-Chr2:186975 Lac8g1774 Lac-Chr8:35937397 1.30E-187 dispersed
Lac3g1772 Lac-Chr3:18308597 Lac2g0017 Lac-Chr2:186975 1.80E-49 dispersed
Lac7g1169 Lac-Chr7:10788598 Lac2g0017 Lac-Chr2:186975 2.40E-41 dispersed
Lac2g0017 Lac-Chr2:186975 Lac8g1770 Lac-Chr8:35886736 7.50E-191 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85968 PF00069 Pkinase 2.60E-51 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0017 - - - 0.0