Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0018 | ATGGAGGACGTCGGCGCCCAAGTTGTGCCTCCAATTTTCATCCACCAAACCTTGACCAGTCGCTACACTGATGTGCCTTCCATCGCCAAGAAGCGTGCCTTATCCTATCAGGTCCCCAACTTCCATCAGCACAATCACCTCCACCAGCATCACTTGCAACAGCAGGGTCAACTCCATGCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCACAAGATTCCTCACCAAGCAGTCCTCCGATACTGTCTCCTCCGACCTAAAGAGGAACGACGATTTGCCTGCTGCTATTCCCTCCACCCTTAAGAAGAAGACGGTGGAGGTTCTGGACGAGGAGGAGGATGAGAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTCGAGGAGCCCGTGTCCAAACCCCCCAAAAAGGTCCGGCCTGGATCTCCCGCCGGTGGCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTGTCGAATGCCAAAGACTATCACCGCAGACATAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACTGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCGCTTTCGGAATTTGATGATGGGAAGAGGAGTTGTAGGAGGAGACTTGCGGGGCACAACTGGCGTAGAAGAAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGACCAGGAAGTAGAGTACCCCCAAGCAGTGGAAATTTGGACATCGTCGGTCTATTGACTGTTCTAGCTCGGGCTCAAGGGAAAAACGAAGACCAGAGTGTGAAAAGCTTGTTGTCTGCAAATAATGACCAGCTCGTTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCTGCAGACCTTGCAGCAAAGTTGCCCAATTTAGAGAATTTTAGGGGGAAGGCTCCTCCACAAAGTTCCTTGCTTCAGCTAAACAAATTAAATGGAAATCCATCTTCTACTTCGACCATGGACTTGCTCACTGTACTTTCAGCTACTTTAGCAGCATCAGCTCCAGACGCTCTTGCAATGCTATCGCAGAAGAGCAGTCTGAGCAGTGATAGTGAGAAAACAAGGTCATCTTGCCCATCTGGTTCTGATCTCCAGAATAGGCCCCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACTAGTTACCAGTCTCCTATGGAAGATTCAGATGGACAAGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGCTGTTTAGCTCTTCACCTGAACATGACACCCCACCAAACTTGGCGGCTTCTAGGAAGTACTTTTCTTCTGATAGCAGTAATCCTATTGAAGAGAGGTCTCCGTCATCTTCGCCTCCTCTCCTGCAAAAGTTGTTTCCCGTGCAAAGCACAGAAGAAACTACCAGTAATGAGAAAACACCAATCAGAAAGGAAGTTAGTGGAATTGTTGAGGTTCGAAAGCCTCCTAGTAGCAATATTCCCTTTGAACTCTTTAGAGAGTCAGATAGAGGAGCTGGTGCAAATTCGTTTCGAACTGTTCCATATCAAGCTGGATACACTTCTTCGGGGTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTGTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCCAACTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGTGTGGTTCTGTCGATTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGTTCTGCATGTTAAATCTTTGGTTCGTGGCAAAGAGCTTGATTTTTGGAGAAGTGGAAGATTCTTAGTATGCACTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTTTATACAAATCCTCAAAAGCATGGAGTAATCCGGAGTTAATCTCAGTGTCACCGTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAAGGGAAAGAATTTGAAAAATCCTGGCACCAAGATTCATTGCACATCTGTGGGTGGCTACATATCCGAAGAAGTAACAGGATTAAGTAGGCAGGGAATATACGATGAGATACACTCTGGAAGTTTCAAAATTGGGGATGCATCACCTACTACTCTTGGTCGTTGTTTTATTGAGGTGGAAAATGGTTTTAGAGGAAATAGCTTCCCTGTTATCATAGCTGATGCTGCCATCTGCAAGGAATTGAGGCATCTTGAGTCCGAGTTTGATGAGTTTGGAGTACATGATATCAGTTCAGAAAGCCATTCATATGTTCCTTCGCAGCCAAGGCTAAAGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTCCTCTTCCGAGCTAGATAATTCAGATTTTTTAATAAGGCGATTCAAATTTTTACTCACGTTCTCAGCAGAGAGGGATTTCTGTGCGTTGGTTAAAACACTTCTTGACATTCTGGTGAAAAAGTGCTTGATCACAGATGGACTACCAATGAAATCTTTGGAAATGATATCTGAGATTCAGCTCTTGAATCGGGCCGTGAAAAGGAGGTGCAGGCGGATGGTTGATTTACTCGTCCATTATTATGTATCTGGCTTTGGTGATGCAGAGAAAAAGTACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCTTCAATGACAGATTCAGATGATATGGTTGATGCACTTACAAATGACCCGCTGGAGATTGGATTGGATTGCTGGAGTTCCCAACTAGATGCAAACGGACAGTCACCGCAGGCTTATGCTTTAATGAGGGGTAATCATTCTTGTAATGAGCTGGTGGCTCGAAAACGTGGTGACAAGAAGAATGGTCAAGTTTCAGTAAGAATCGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGGGGCAGGGCGCAAGGAAGATCCTGCTCCAGGTGTGCAGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACGCACAGGTTGCTTCATAGACCCTATATTCATTCAATGCTTGCTATAGCTGCAGTGTGCGTATGTGTGTGCCTATTTTTGCGAGGTTCCCCGGACATCGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGAGATGTATTAGTTGGAATGGAAGGGGATGGTTATCGTATTATTTTTGCTTCTGTGGACAAGACCAGAGGTTTGGGGCTGCCTGCCTGTAACAGAAGGCGCCACTGGACGCGGAAGAAAGCAGGTCGGGGATGA | 3339 | 46.09 | MEDVGAQVVPPIFIHQTLTSRYTDVPSIAKKRALSYQVPNFHQHNHLHQHHLQQQGQLHAHTWNPKAWDWDSTRFLTKQSSDTVSSDLKRNDDLPAAIPSTLKKKTVEVLDEEEDESLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPAGGTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRVPPSSGNLDIVGLLTVLARAQGKNEDQSVKSLLSANNDQLVQILNKINSLPLPADLAAKLPNLENFRGKAPPQSSLLQLNKLNGNPSSTSTMDLLTVLSATLAASAPDALAMLSQKSSLSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFSSSPEHDTPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNEKTPIRKEVSGIVEVRKPPSSNIPFELFRESDRGAGANSFRTVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSIYMSMSSIAWEQLEENLVLHVKSLVRGKELDFWRSGRFLVCTGRQLASHKDGKIRLYKSSKAWSNPELISVSPLAVVGGQKTSFLLKGKNLKNPGTKIHCTSVGGYISEEVTGLSRQGIYDEIHSGSFKIGDASPTTLGRCFIEVENGFRGNSFPVIIADAAICKELRHLESEFDEFGVHDISSESHSYVPSQPRLKDEILQFLNELGWLFQRERSSSELDNSDFLIRRFKFLLTFSAERDFCALVKTLLDILVKKCLITDGLPMKSLEMISEIQLLNRAVKRRCRRMVDLLVHYYVSGFGDAEKKYLFPPNFIGPGGITPLHLAASMTDSDDMVDALTNDPLEIGLDCWSSQLDANGQSPQAYALMRGNHSCNELVARKRGDKKNGQVSVRIGNEIEQLEVSSGERGRAQGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGDVLVGMEGDGYRIIFASVDKTRGLGLPACNRRRHWTRKKAGRG | 1112 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 191194 | 196249 | - | Lag0036656.1 | Lac2g0018 | 597282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0018 | 1112 | Pfam | SBP domain | 155 | 228 | IPR004333 | GO:0003677(InterPro) | |
Lac2g0018 | 1112 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 68 | 1068 | IPR044817 | GO:0003677(InterPro) | |
Lac2g0018 | 1112 | MobiDBLite | consensus disorder prediction | 416 | 461 | - | - | |
Lac2g0018 | 1112 | FunFam | Squamosa promoter-binding-like protein 14 | 146 | 216 | - | - | |
Lac2g0018 | 1112 | Gene3D | - | 146 | 216 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0018 | 1112 | MobiDBLite | consensus disorder prediction | 359 | 461 | - | - | |
Lac2g0018 | 1112 | SUPERFAMILY | SBT domain | 153 | 233 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0018 | 1112 | MobiDBLite | consensus disorder prediction | 225 | 246 | - | - | |
Lac2g0018 | 1112 | MobiDBLite | consensus disorder prediction | 359 | 383 | - | - | |
Lac2g0018 | 1112 | ProSiteProfiles | Zinc finger SBP-type profile. | 152 | 229 | IPR004333 | GO:0003677(InterPro) | |
Lac2g0018 | 1112 | MobiDBLite | consensus disorder prediction | 391 | 408 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0948 | Lac-Chr11:10399892 | Lac2g0018 | Lac-Chr2:191194 | 1.10E-25 | dispersed | |
Lac2g0018 | Lac-Chr2:191194 | Lac7g0829 | Lac-Chr7:6625723 | 4.90E-32 | dispersed | |
Lac2g0018 | Lac-Chr2:191194 | Lac3g0067 | Lac-Chr3:464972 | 8.40E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23412 | PF03110 | SBP | 4.70E-29 | No_clan | Lac | TF |
Pathway information
