Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0018 ATGGAGGACGTCGGCGCCCAAGTTGTGCCTCCAATTTTCATCCACCAAACCTTGACCAGTCGCTACACTGATGTGCCTTCCATCGCCAAGAAGCGTGCCTTATCCTATCAGGTCCCCAACTTCCATCAGCACAATCACCTCCACCAGCATCACTTGCAACAGCAGGGTCAACTCCATGCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCACAAGATTCCTCACCAAGCAGTCCTCCGATACTGTCTCCTCCGACCTAAAGAGGAACGACGATTTGCCTGCTGCTATTCCCTCCACCCTTAAGAAGAAGACGGTGGAGGTTCTGGACGAGGAGGAGGATGAGAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTCGAGGAGCCCGTGTCCAAACCCCCCAAAAAGGTCCGGCCTGGATCTCCCGCCGGTGGCACCTACCCTATGTGCCAGGTCGATAATTGTAAGGAAGATCTGTCGAATGCCAAAGACTATCACCGCAGACATAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACTGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCATCCGCTTTCGGAATTTGATGATGGGAAGAGGAGTTGTAGGAGGAGACTTGCGGGGCACAACTGGCGTAGAAGAAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGACCAGGAAGTAGAGTACCCCCAAGCAGTGGAAATTTGGACATCGTCGGTCTATTGACTGTTCTAGCTCGGGCTCAAGGGAAAAACGAAGACCAGAGTGTGAAAAGCTTGTTGTCTGCAAATAATGACCAGCTCGTTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCTGCAGACCTTGCAGCAAAGTTGCCCAATTTAGAGAATTTTAGGGGGAAGGCTCCTCCACAAAGTTCCTTGCTTCAGCTAAACAAATTAAATGGAAATCCATCTTCTACTTCGACCATGGACTTGCTCACTGTACTTTCAGCTACTTTAGCAGCATCAGCTCCAGACGCTCTTGCAATGCTATCGCAGAAGAGCAGTCTGAGCAGTGATAGTGAGAAAACAAGGTCATCTTGCCCATCTGGTTCTGATCTCCAGAATAGGCCCCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACTAGTTACCAGTCTCCTATGGAAGATTCAGATGGACAAGTTCAAGGAACTCGAGTTGGTTTGCCACTTCAGCTGTTTAGCTCTTCACCTGAACATGACACCCCACCAAACTTGGCGGCTTCTAGGAAGTACTTTTCTTCTGATAGCAGTAATCCTATTGAAGAGAGGTCTCCGTCATCTTCGCCTCCTCTCCTGCAAAAGTTGTTTCCCGTGCAAAGCACAGAAGAAACTACCAGTAATGAGAAAACACCAATCAGAAAGGAAGTTAGTGGAATTGTTGAGGTTCGAAAGCCTCCTAGTAGCAATATTCCCTTTGAACTCTTTAGAGAGTCAGATAGAGGAGCTGGTGCAAATTCGTTTCGAACTGTTCCATATCAAGCTGGATACACTTCTTCGGGGTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAACTGTTTGACAAGGATCCCAGTCAGTTTCCAGGGACATTGCGGACACAAATATACAATTGGCTGTCCAACTGTCCATCTGAAATGGAAAGCTACATACGGCCTGGTTGTGTGGTTCTGTCGATTTATATGTCTATGTCATCCATTGCATGGGAACAGCTTGAAGAAAATTTGGTTCTGCATGTTAAATCTTTGGTTCGTGGCAAAGAGCTTGATTTTTGGAGAAGTGGAAGATTCTTAGTATGCACTGGGAGGCAACTAGCGTCACACAAGGATGGGAAGATTCGTTTATACAAATCCTCAAAAGCATGGAGTAATCCGGAGTTAATCTCAGTGTCACCGTTGGCAGTTGTGGGTGGACAAAAGACCTCCTTTTTATTAAAGGGAAAGAATTTGAAAAATCCTGGCACCAAGATTCATTGCACATCTGTGGGTGGCTACATATCCGAAGAAGTAACAGGATTAAGTAGGCAGGGAATATACGATGAGATACACTCTGGAAGTTTCAAAATTGGGGATGCATCACCTACTACTCTTGGTCGTTGTTTTATTGAGGTGGAAAATGGTTTTAGAGGAAATAGCTTCCCTGTTATCATAGCTGATGCTGCCATCTGCAAGGAATTGAGGCATCTTGAGTCCGAGTTTGATGAGTTTGGAGTACATGATATCAGTTCAGAAAGCCATTCATATGTTCCTTCGCAGCCAAGGCTAAAGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGGTCCTCTTCCGAGCTAGATAATTCAGATTTTTTAATAAGGCGATTCAAATTTTTACTCACGTTCTCAGCAGAGAGGGATTTCTGTGCGTTGGTTAAAACACTTCTTGACATTCTGGTGAAAAAGTGCTTGATCACAGATGGACTACCAATGAAATCTTTGGAAATGATATCTGAGATTCAGCTCTTGAATCGGGCCGTGAAAAGGAGGTGCAGGCGGATGGTTGATTTACTCGTCCATTATTATGTATCTGGCTTTGGTGATGCAGAGAAAAAGTACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACGCCTCTGCATTTGGCAGCTTCAATGACAGATTCAGATGATATGGTTGATGCACTTACAAATGACCCGCTGGAGATTGGATTGGATTGCTGGAGTTCCCAACTAGATGCAAACGGACAGTCACCGCAGGCTTATGCTTTAATGAGGGGTAATCATTCTTGTAATGAGCTGGTGGCTCGAAAACGTGGTGACAAGAAGAATGGTCAAGTTTCAGTAAGAATCGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGTGAGCGGGGCAGGGCGCAAGGAAGATCCTGCTCCAGGTGTGCAGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACGCACAGGTTGCTTCATAGACCCTATATTCATTCAATGCTTGCTATAGCTGCAGTGTGCGTATGTGTGTGCCTATTTTTGCGAGGTTCCCCGGACATCGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGGAGATGTATTAGTTGGAATGGAAGGGGATGGTTATCGTATTATTTTTGCTTCTGTGGACAAGACCAGAGGTTTGGGGCTGCCTGCCTGTAACAGAAGGCGCCACTGGACGCGGAAGAAAGCAGGTCGGGGATGA 3339 46.09 MEDVGAQVVPPIFIHQTLTSRYTDVPSIAKKRALSYQVPNFHQHNHLHQHHLQQQGQLHAHTWNPKAWDWDSTRFLTKQSSDTVSSDLKRNDDLPAAIPSTLKKKTVEVLDEEEDESLRLNLGGGLNLNYVEEPVSKPPKKVRPGSPAGGTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRVPPSSGNLDIVGLLTVLARAQGKNEDQSVKSLLSANNDQLVQILNKINSLPLPADLAAKLPNLENFRGKAPPQSSLLQLNKLNGNPSSTSTMDLLTVLSATLAASAPDALAMLSQKSSLSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFSSSPEHDTPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPVQSTEETTSNEKTPIRKEVSGIVEVRKPPSSNIPFELFRESDRGAGANSFRTVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSIYMSMSSIAWEQLEENLVLHVKSLVRGKELDFWRSGRFLVCTGRQLASHKDGKIRLYKSSKAWSNPELISVSPLAVVGGQKTSFLLKGKNLKNPGTKIHCTSVGGYISEEVTGLSRQGIYDEIHSGSFKIGDASPTTLGRCFIEVENGFRGNSFPVIIADAAICKELRHLESEFDEFGVHDISSESHSYVPSQPRLKDEILQFLNELGWLFQRERSSSELDNSDFLIRRFKFLLTFSAERDFCALVKTLLDILVKKCLITDGLPMKSLEMISEIQLLNRAVKRRCRRMVDLLVHYYVSGFGDAEKKYLFPPNFIGPGGITPLHLAASMTDSDDMVDALTNDPLEIGLDCWSSQLDANGQSPQAYALMRGNHSCNELVARKRGDKKNGQVSVRIGNEIEQLEVSSGERGRAQGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGDVLVGMEGDGYRIIFASVDKTRGLGLPACNRRRHWTRKKAGRG 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 191194 196249 - Lag0036656.1 Lac2g0018 597282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0018 1112 Pfam SBP domain 155 228 IPR004333 GO:0003677(InterPro)
Lac2g0018 1112 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 1068 IPR044817 GO:0003677(InterPro)
Lac2g0018 1112 MobiDBLite consensus disorder prediction 416 461 - -
Lac2g0018 1112 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
Lac2g0018 1112 Gene3D - 146 216 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0018 1112 MobiDBLite consensus disorder prediction 359 461 - -
Lac2g0018 1112 SUPERFAMILY SBT domain 153 233 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0018 1112 MobiDBLite consensus disorder prediction 225 246 - -
Lac2g0018 1112 MobiDBLite consensus disorder prediction 359 383 - -
Lac2g0018 1112 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677(InterPro)
Lac2g0018 1112 MobiDBLite consensus disorder prediction 391 408 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0948 Lac-Chr11:10399892 Lac2g0018 Lac-Chr2:191194 1.10E-25 dispersed
Lac2g0018 Lac-Chr2:191194 Lac7g0829 Lac-Chr7:6625723 4.90E-32 dispersed
Lac2g0018 Lac-Chr2:191194 Lac3g0067 Lac-Chr3:464972 8.40E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50570 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50570 63.1 1.3e-37 154.8
Lac2g0018 . 1 1068 SBP-box Gene Family AT1G20980 50.2 8.3e-268 921.0
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50570 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50570 63.1 1.3e-37 154.8
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50670 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50670 63.1 1.3e-37 154.8
Lac2g0018 . 1 1068 SBP-box Gene Family AT1G20980 50.2 8.3e-268 921.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23412 PF03110 SBP 4.70E-29 No_clan Lac TF