Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0047 ATGAGAATGGCGGGGTACAGCGAAGAAGGAGGACCAGCTTCACGCTACGTTAATCATCCTCAACTTCTGAATCCGGAACTGCACCTCGACACTCCATCCTCTTCTATTCCCTTTCATCATCATCATCATCATCATCAATTCAACCACTCTAATCACTCTAATTCCAAGCTCGATGAGGATCATGACAATAATCCAACCGCTCACAATCAAGACTCCATGTTGGTCCCTTCTTCTCTCCGCCGCCCTCGCGGCCGTCCTCCTGGTTCCAAGAACAAGCCCAAGCCTCCCATTATCGTCACCCGCGATAGCCCCAACGTCCTTGGATCTCATGTCCTCGAGGTCTCCGCCAACGCCGATATCGTCGATAGCCTTTCTAATTATGCTCGCCGGAGGGGGAGGGGAGTCAGCATCCTCTCCGGCACCGGAACCGTCGCCAACGTCACTCTCCGTCAGCCCGCCTCTCCGGCTGGAAGTGTCATTACTCTTCATGGCAGGTTCGAGATTCTCTCGCTCACCGGCACCGTGCTTCCTCCGCCGGCTCCTCCGCAGGCGGGCGGGTTGTCCATATTTCTCGCCGGCTCACAGGGGCAGGTGGTCGGAGGGACGGTGGTGGGCCCCTTGGTGGCTTCGGGACCGGTGATTTTGATGGCCGCGTCGTTTTCGAACGCTGTGTTTGAGCGGTTGCCTTTGGAGGAAGAGGAGGAAGGCGGAGTGCAAGTTCAGCCCACGGCGTCGCAGTCGTCGGGGTCACTGGAGGAGGAGGGGCTGGGCAGATGGGCGACGGCGGTGGAGGCAGTGGGAATGCAAATGACGGCAGCGGCGGAGGCGGTGGAGTTCCGTTCTTAG 846 58.51 MRMAGYSEEGGPASRYVNHPQLLNPELHLDTPSSSIPFHHHHHHHQFNHSNHSNSKLDEDHDNNPTAHNQDSMLVPSSLRRPRGRPPGSKNKPKPPIIVTRDSPNVLGSHVLEVSANADIVDSLSNYARRRGRGVSILSGTGTVANVTLRQPASPAGSVITLHGRFEILSLTGTVLPPPAPPQAGGLSIFLAGSQGQVVGGTVVGPLVASGPVILMAASFSNAVFERLPLEEEEEGGVQVQPTASQSSGSLEEEGLGRWATAVEAVGMQMTAAAEAVEFRS 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 386167 387012 + Lag0036685.1 Lac2g0047 597311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0047 281 MobiDBLite consensus disorder prediction 51 66 - -
Lac2g0047 281 MobiDBLite consensus disorder prediction 232 253 - -
Lac2g0047 281 CDD DUF296 110 194 IPR005175 -
Lac2g0047 281 Gene3D - 109 242 - -
Lac2g0047 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 221 IPR005175 -
Lac2g0047 281 ProSiteProfiles PPC domain profile profile. 104 243 IPR005175 -
Lac2g0047 281 MobiDBLite consensus disorder prediction 25 102 - -
Lac2g0047 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 234 - -
Lac2g0047 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 257 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Lac2g0047 281 FunFam AT-hook motif nuclear-localized protein 107 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0047 Lac-Chr2:386167 Lac6g2829 Lac-Chr6:45927148 3.60E-64 dispersed
Lac2g0047 Lac-Chr2:386167 Lac2g0053 Lac-Chr2:418593 1.30E-21 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0047 - - - 0.0