Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0048 | ATGGACGATAGCGATAAGGCGGGGCAGGATTTGCCACACGGTCCTGGCGCAGGTCTTGCTCACGACCAAGTTCAAGTTCAGGAACCGGGATCTGCACCGCCAAAGGAGGATCAGAACCTCAAAGAAGATGGGCAGTCCGCCTGCCCAACGTTTGACGATGTTAAATTTCACGAACGTTCTTGCCTTCAAGAACCGATTGATGACGATCAGGATATGCCTGATCAGCCTAATGTTGAGACTGCTGCTGATGGAAAAGTTATCGAGGTTGCTATTGATGAACCGCCTGAAAGGAAAGAAAATTCCATGGAGACTGATTCCCAAATTGGGAATGAAGATAATCCTTCTGCACCTCCCATTTCACCTGAGATCTCTCTGCCTTCAAATGCCGAAAATCAGAGTGTGACACCCGTGAAGTGGACTGATATCGAAATGGCTGAAGCTGACGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAAATTGAGAATTTCTACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAATTGTTTGAAGTTATGGAGAGCTGTTATTAGGCTGGGAGGCTATGATGTGGCACTTTTAGAATATGAAAAGCATAAAAAGCTAACTGGGGAACTGCAACTCCCTGTTGGATCCCTTCCTCAGACTACAAATACAGAAAAGGAGACTGGCTATTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCCGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAACGTGAAAAGAACCTCAAGGGTTTGCTAAAACAGAAGATGCCAACTTATACAGAGCACGCGGGAAGAGATGCAGATTTTGAATCAGATAAGCAAGTGATGACTACGGTTATGGATGTCGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGATTGCTTTGAAGTGTATGCATTAGTCCCAGGGCTTTTACGAGAAGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACACCTTTTAAAAAGGTGGTGAGCTTACCCGCAAGAATCGATCCTCTTCAGACATCTGCCGTGGTGAGCCTGCATGGTCGACTTTTTGTACGAGTCCCTTTTGAGCAAGGATCTATGTGA | 1254 | 47.13 | MDDSDKAGQDLPHGPGAGLAHDQVQVQEPGSAPPKEDQNLKEDGQSACPTFDDVKFHERSCLQEPIDDDQDMPDQPNVETAADGKVIEVAIDEPPERKENSMETDSQIGNEDNPSAPPISPEISLPSNAENQSVTPVKWTDIEMAEADESGTPEDRVAFMKEIENFYRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVALLEYEKHKKLTGELQLPVGSLPQTTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEVAEPIIKDKNLGSTSKREKNLKGLLKQKMPTYTEHAGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPARIDPLQTSAVVSLHGRLFVRVPFEQGSM | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 391582 | 395898 | - | Lag0036686.1 | Lac2g0048 | 597312 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0048 | 417 | MobiDBLite | consensus disorder prediction | 1 | 132 | - | - | |
Lac2g0048 | 417 | ProSiteProfiles | ARID domain profile. | 153 | 269 | IPR001606 | GO:0003677(InterPro) | |
Lac2g0048 | 417 | Pfam | Hsp20/alpha crystallin family | 333 | 413 | IPR002068 | - | |
Lac2g0048 | 417 | SUPERFAMILY | HSP20-like chaperones | 324 | 412 | IPR008978 | - | |
Lac2g0048 | 417 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 23 | 201 | IPR045147 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro) | |
Lac2g0048 | 417 | SUPERFAMILY | ARID-like | 151 | 219 | IPR036431 | GO:0003677(InterPro) | |
Lac2g0048 | 417 | Gene3D | - | 306 | 416 | IPR008978 | - | |
Lac2g0048 | 417 | CDD | ARID | 155 | 201 | - | - | |
Lac2g0048 | 417 | MobiDBLite | consensus disorder prediction | 89 | 105 | - | - | |
Lac2g0048 | 417 | CDD | ACD_sHsps_p23-like | 332 | 411 | - | - | |
Lac2g0048 | 417 | Pfam | ARID/BRIGHT DNA binding domain | 156 | 223 | IPR001606 | GO:0003677(InterPro) | |
Lac2g0048 | 417 | Gene3D | - | 143 | 237 | IPR036431 | GO:0003677(InterPro) | |
Lac2g0048 | 417 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 316 | 417 | IPR002068 | - | |
Lac2g0048 | 417 | SMART | ARID_2 | 150 | 237 | - | - | |
Lac2g0048 | 417 | MobiDBLite | consensus disorder prediction | 52 | 66 | - | - | |
Lac2g0048 | 417 | SMART | bright_3 | 154 | 270 | IPR001606 | GO:0003677(InterPro) | |
Lac2g0048 | 417 | FunFam | AT-rich interactive domain-containing protein 3 | 308 | 416 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0048 | Lac-Chr2:391582 | Lac5g0024 | Lac-Chr5:265020 | 3.90E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23414 | PF00011 | HSP20 | 6.20E-05 | CL0190 | Lac | TR |
Pathway information
