Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0048 ATGGACGATAGCGATAAGGCGGGGCAGGATTTGCCACACGGTCCTGGCGCAGGTCTTGCTCACGACCAAGTTCAAGTTCAGGAACCGGGATCTGCACCGCCAAAGGAGGATCAGAACCTCAAAGAAGATGGGCAGTCCGCCTGCCCAACGTTTGACGATGTTAAATTTCACGAACGTTCTTGCCTTCAAGAACCGATTGATGACGATCAGGATATGCCTGATCAGCCTAATGTTGAGACTGCTGCTGATGGAAAAGTTATCGAGGTTGCTATTGATGAACCGCCTGAAAGGAAAGAAAATTCCATGGAGACTGATTCCCAAATTGGGAATGAAGATAATCCTTCTGCACCTCCCATTTCACCTGAGATCTCTCTGCCTTCAAATGCCGAAAATCAGAGTGTGACACCCGTGAAGTGGACTGATATCGAAATGGCTGAAGCTGACGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAAATTGAGAATTTCTACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAATTGTTTGAAGTTATGGAGAGCTGTTATTAGGCTGGGAGGCTATGATGTGGCACTTTTAGAATATGAAAAGCATAAAAAGCTAACTGGGGAACTGCAACTCCCTGTTGGATCCCTTCCTCAGACTACAAATACAGAAAAGGAGACTGGCTATTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCCGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAACGTGAAAAGAACCTCAAGGGTTTGCTAAAACAGAAGATGCCAACTTATACAGAGCACGCGGGAAGAGATGCAGATTTTGAATCAGATAAGCAAGTGATGACTACGGTTATGGATGTCGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGATTGCTTTGAAGTGTATGCATTAGTCCCAGGGCTTTTACGAGAAGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACACCTTTTAAAAAGGTGGTGAGCTTACCCGCAAGAATCGATCCTCTTCAGACATCTGCCGTGGTGAGCCTGCATGGTCGACTTTTTGTACGAGTCCCTTTTGAGCAAGGATCTATGTGA 1254 47.13 MDDSDKAGQDLPHGPGAGLAHDQVQVQEPGSAPPKEDQNLKEDGQSACPTFDDVKFHERSCLQEPIDDDQDMPDQPNVETAADGKVIEVAIDEPPERKENSMETDSQIGNEDNPSAPPISPEISLPSNAENQSVTPVKWTDIEMAEADESGTPEDRVAFMKEIENFYRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVALLEYEKHKKLTGELQLPVGSLPQTTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEVAEPIIKDKNLGSTSKREKNLKGLLKQKMPTYTEHAGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPARIDPLQTSAVVSLHGRLFVRVPFEQGSM 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 391582 395898 - Lag0036686.1 Lac2g0048 597312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0048 417 MobiDBLite consensus disorder prediction 1 132 - -
Lac2g0048 417 ProSiteProfiles ARID domain profile. 153 269 IPR001606 GO:0003677(InterPro)
Lac2g0048 417 Pfam Hsp20/alpha crystallin family 333 413 IPR002068 -
Lac2g0048 417 SUPERFAMILY HSP20-like chaperones 324 412 IPR008978 -
Lac2g0048 417 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 23 201 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
Lac2g0048 417 SUPERFAMILY ARID-like 151 219 IPR036431 GO:0003677(InterPro)
Lac2g0048 417 Gene3D - 306 416 IPR008978 -
Lac2g0048 417 CDD ARID 155 201 - -
Lac2g0048 417 MobiDBLite consensus disorder prediction 89 105 - -
Lac2g0048 417 CDD ACD_sHsps_p23-like 332 411 - -
Lac2g0048 417 Pfam ARID/BRIGHT DNA binding domain 156 223 IPR001606 GO:0003677(InterPro)
Lac2g0048 417 Gene3D - 143 237 IPR036431 GO:0003677(InterPro)
Lac2g0048 417 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 316 417 IPR002068 -
Lac2g0048 417 SMART ARID_2 150 237 - -
Lac2g0048 417 MobiDBLite consensus disorder prediction 52 66 - -
Lac2g0048 417 SMART bright_3 154 270 IPR001606 GO:0003677(InterPro)
Lac2g0048 417 FunFam AT-rich interactive domain-containing protein 3 308 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0048 Lac-Chr2:391582 Lac5g0024 Lac-Chr5:265020 3.90E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23414 PF00011 HSP20 6.20E-05 CL0190 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0048 - - - 0.0