Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0048 ATGGACGATAGCGATAAGGCGGGGCAGGATTTGCCACACGGTCCTGGCGCAGGTCTTGCTCACGACCAAGTTCAAGTTCAGGAACCGGGATCTGCACCGCCAAAGGAGGATCAGAACCTCAAAGAAGATGGGCAGTCCGCCTGCCCAACGTTTGACGATGTTAAATTTCACGAACGTTCTTGCCTTCAAGAACCGATTGATGACGATCAGGATATGCCTGATCAGCCTAATGTTGAGACTGCTGCTGATGGAAAAGTTATCGAGGTTGCTATTGATGAACCGCCTGAAAGGAAAGAAAATTCCATGGAGACTGATTCCCAAATTGGGAATGAAGATAATCCTTCTGCACCTCCCATTTCACCTGAGATCTCTCTGCCTTCAAATGCCGAAAATCAGAGTGTGACACCCGTGAAGTGGACTGATATCGAAATGGCTGAAGCTGACGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAAATTGAGAATTTCTACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAATTGTTTGAAGTTATGGAGAGCTGTTATTAGGCTGGGAGGCTATGATGTGGCACTTTTAGAATATGAAAAGCATAAAAAGCTAACTGGGGAACTGCAACTCCCTGTTGGATCCCTTCCTCAGACTACAAATACAGAAAAGGAGACTGGCTATTATCAAGCTCCTGGCTCAGGTAGGGCCCGAAGGGATGCTGCCGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTGCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCTAAACGTGAAAAGAACCTCAAGGGTTTGCTAAAACAGAAGATGCCAACTTATACAGAGCACGCGGGAAGAGATGCAGATTTTGAATCAGATAAGCAAGTGATGACTACGGTTATGGATGTCGGACCTCCAGCTGATTGGGTCAAAATTAATGTGCGTGAGATGAATGATTGCTTTGAAGTGTATGCATTAGTCCCAGGGCTTTTACGAGAAGAGGTTCGGGTTCAATCCGATCCAGCTGGACGTCTGGTAATTACTGGTCAACCTGAGCAGGTTGATAATCCTTGGGGCATCACACCTTTTAAAAAGGTGGTGAGCTTACCCGCAAGAATCGATCCTCTTCAGACATCTGCCGTGGTGAGCCTGCATGGTCGACTTTTTGTACGAGTCCCTTTTGAGCAAGGATCTATGTGA 1254 47.13 MDDSDKAGQDLPHGPGAGLAHDQVQVQEPGSAPPKEDQNLKEDGQSACPTFDDVKFHERSCLQEPIDDDQDMPDQPNVETAADGKVIEVAIDEPPERKENSMETDSQIGNEDNPSAPPISPEISLPSNAENQSVTPVKWTDIEMAEADESGTPEDRVAFMKEIENFYRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVALLEYEKHKKLTGELQLPVGSLPQTTNTEKETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEVAEPIIKDKNLGSTSKREKNLKGLLKQKMPTYTEHAGRDADFESDKQVMTTVMDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPARIDPLQTSAVVSLHGRLFVRVPFEQGSM 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 391582 395898 - Lag0036686.1 Lac2g0048 597312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0048 417 MobiDBLite consensus disorder prediction 1 132 - -
Lac2g0048 417 ProSiteProfiles ARID domain profile. 153 269 IPR001606 GO:0003677(InterPro)
Lac2g0048 417 Pfam Hsp20/alpha crystallin family 333 413 IPR002068 -
Lac2g0048 417 SUPERFAMILY HSP20-like chaperones 324 412 IPR008978 -
Lac2g0048 417 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 23 201 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
Lac2g0048 417 SUPERFAMILY ARID-like 151 219 IPR036431 GO:0003677(InterPro)
Lac2g0048 417 Gene3D - 306 416 IPR008978 -
Lac2g0048 417 CDD ARID 155 201 - -
Lac2g0048 417 MobiDBLite consensus disorder prediction 89 105 - -
Lac2g0048 417 CDD ACD_sHsps_p23-like 332 411 - -
Lac2g0048 417 Pfam ARID/BRIGHT DNA binding domain 156 223 IPR001606 GO:0003677(InterPro)
Lac2g0048 417 Gene3D - 143 237 IPR036431 GO:0003677(InterPro)
Lac2g0048 417 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 316 417 IPR002068 -
Lac2g0048 417 SMART ARID_2 150 237 - -
Lac2g0048 417 MobiDBLite consensus disorder prediction 52 66 - -
Lac2g0048 417 SMART bright_3 154 270 IPR001606 GO:0003677(InterPro)
Lac2g0048 417 FunFam AT-rich interactive domain-containing protein 3 308 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0048 Lac-Chr2:391582 Lac5g0024 Lac-Chr5:265020 3.90E-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g2048 . 19 385 ARID Transcription Factor Family AT1G04880 57.0 7.1e-107 385.2
Lac5g0024 . 209 479 ARID Transcription Factor Family AT1G20910 60.3 4.1e-90 329.3
Lac2g0048 . 141 384 ARID Transcription Factor Family AT1G20910 56.6 3.9e-77 286.2
Lac2g0113 . 16 350 ARID Transcription Factor Family AT1G76110 59.2 1.3e-105 380.6
Lac5g0024 . 188 509 ARID Transcription Factor Family AT1G76510 59.6 3.3e-109 392.9
Lac2g0048 . 126 414 ARID Transcription Factor Family AT1G76510 60.5 8.2e-100 361.7
Lac12g2513 . 2 772 ARID Transcription Factor Family AT3G43240 59.2 2.4e-264 909.1
Lac4g3061 . 5 776 ARID Transcription Factor Family AT3G43240 57.7 1.4e-261 899.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23414 PF00011 HSP20 6.20E-05 CL0190 Lac TR