Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0052 ATGGAGAAGGCGCCGACCACTGTTTCAGCCATGGATGCTTTCGAGAAGCTGGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTATAGGGCAAGGGAGAAGGCTACCGGCAAGATTGTAGCGCTCAAGAAGACGCGCCTCCATGAGGATGAAGAAGGTGTTCCTCCCACTACTCTCAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCTCATATCGTTAGGCTGATGGATGTCAAACAGGGCCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATATATGGATACTGATCTGAAAAAATACATCAAGAGTTTCCGTCATACGGGAGAAGGCATTCCCGTCAGCACAGTCAAGAGTTTGATGTACCAACTCTGCAAGGGTGTTGCCTTCTGCCATGGTCATGGAATCTTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGGCTGGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGATACTAACCCTCTGGTATAGAGCTCCCGAAGTTCTGTTAGGAGCTACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGGCTGCATATTCGCCGAACTTGCCACCAAGCAGGCGCTCTTTCCTGGAGATTCCGAGTTGCAACAGCTCCTTCATATCTTCAGACTATTAGGGACCCCAAATGAAAAAATCTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAGTATCCCCAGTGGAACCCCCAAAGTCTTTCAACTGCCGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTGCACAAATGTTGAAGTATGAACCCTCAACACGTATTTCGGCAAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAAGCATATCTCTGA 939 46.43 MEKAPTTVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIKSFRHTGEGIPVSTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKIWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKGLDLLAQMLKYEPSTRISAKKAMEHPYFDDLNKAYL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 413014 414847 - Lag0036690.1 Lac2g0052 597316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0052 312 SUPERFAMILY Protein kinase-like (PK-like) 8 308 IPR011009 -
Lac2g0052 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Lac2g0052 312 SMART serkin_6 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0052 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
Lac2g0052 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0052 312 PANTHER CELL DIVISION PROTEIN KINASE 14 304 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Lac2g0052 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0052 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Lac2g0052 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0052 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Lac2g0052 312 Gene3D Transferase(Phosphotransferase) domain 1 101 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1740 Lac-Chr1:38878466 Lac2g0052 Lac-Chr2:413014 8.20E-123 dispersed
Lac1g2651 Lac-Chr1:47820983 Lac2g0052 Lac-Chr2:413014 2.90E-33 dispersed
Lac2g0052 Lac-Chr2:413014 Lac9g2934 Lac-Chr9:47124427 8.00E-65 dispersed
Lac2g0052 Lac-Chr2:413014 Lac6g0737 Lac-Chr6:6251344 2.20E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85969 PF00069 Pkinase 1.60E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0052 K07760 - csv:101208001 617.076