Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0052 | ATGGAGAAGGCGCCGACCACTGTTTCAGCCATGGATGCTTTCGAGAAGCTGGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTATAGGGCAAGGGAGAAGGCTACCGGCAAGATTGTAGCGCTCAAGAAGACGCGCCTCCATGAGGATGAAGAAGGTGTTCCTCCCACTACTCTCAGAGAGGTTTCAATTCTTCGAATGCTTTCTCGGGATCCTCATATCGTTAGGCTGATGGATGTCAAACAGGGCCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATATATGGATACTGATCTGAAAAAATACATCAAGAGTTTCCGTCATACGGGAGAAGGCATTCCCGTCAGCACAGTCAAGAGTTTGATGTACCAACTCTGCAAGGGTGTTGCCTTCTGCCATGGTCATGGAATCTTGCACAGGGACCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGGCTGGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGATACTAACCCTCTGGTATAGAGCTCCCGAAGTTCTGTTAGGAGCTACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGGCTGCATATTCGCCGAACTTGCCACCAAGCAGGCGCTCTTTCCTGGAGATTCCGAGTTGCAACAGCTCCTTCATATCTTCAGACTATTAGGGACCCCAAATGAAAAAATCTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAGTATCCCCAGTGGAACCCCCAAAGTCTTTCAACTGCCGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTGCACAAATGTTGAAGTATGAACCCTCAACACGTATTTCGGCAAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAAGCATATCTCTGA | 939 | 46.43 | MEKAPTTVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIKSFRHTGEGIPVSTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKIWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKGLDLLAQMLKYEPSTRISAKKAMEHPYFDDLNKAYL | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 413014 | 414847 | - | Lag0036690.1 | Lac2g0052 | 597316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0052 | 312 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 308 | IPR011009 | - | |
Lac2g0052 | 312 | ProSitePatterns | Protein kinases ATP-binding region signature. | 20 | 43 | IPR017441 | GO:0005524(InterPro) | |
Lac2g0052 | 312 | SMART | serkin_6 | 14 | 304 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0052 | 312 | FunFam | Cyclin-dependent kinase B2,2 | 10 | 100 | - | - | |
Lac2g0052 | 312 | Pfam | Protein kinase domain | 14 | 304 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0052 | 312 | PANTHER | CELL DIVISION PROTEIN KINASE | 14 | 304 | IPR050108 | GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER) | |
Lac2g0052 | 312 | ProSiteProfiles | Protein kinase domain profile. | 14 | 304 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0052 | 312 | FunFam | Cyclin-dependent kinase 2 | 102 | 311 | - | - | |
Lac2g0052 | 312 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 141 | 153 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0052 | 312 | Gene3D | Phosphorylase Kinase; domain 1 | 9 | 100 | - | - | |
Lac2g0052 | 312 | Gene3D | Transferase(Phosphotransferase) domain 1 | 101 | 311 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g1740 | Lac-Chr1:38878466 | Lac2g0052 | Lac-Chr2:413014 | 8.20E-123 | dispersed | |
Lac1g2651 | Lac-Chr1:47820983 | Lac2g0052 | Lac-Chr2:413014 | 2.90E-33 | dispersed | |
Lac2g0052 | Lac-Chr2:413014 | Lac9g2934 | Lac-Chr9:47124427 | 8.00E-65 | dispersed | |
Lac2g0052 | Lac-Chr2:413014 | Lac6g0737 | Lac-Chr6:6251344 | 2.20E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85969 | PF00069 | Pkinase | 1.60E-71 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0052 | K07760 | - | csv:101208001 | 617.076 |