Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0053 ATGTCAGGATCTGAGGCCGGAGTGATGACCAGCAGCGAACCCTTCACCATCGGTCTTCAGAAGAGTCCAGTACAGTCACAACAGCCGGTCTTGCAGGGCATGCATTTACCTTTCGGCGCCGACGGCGTCTACAAGCCCGTCGCCACCGCCTCCCCCACCTATCACTCCTCCGTCGTCGCCGATGGATCTGCTCGAGAAGCTTTCGTTAACATGAATACTCAAAGCGAGCCTGTAAAGCGGAAGAGAGGGAGGCCTAGGAAGTATGGGCCAGATGGCAGTATGGCACTGGCTCCTGCAGTCCCCTCCGCCGCCGCAACTCAGTCCAGTGGAGGTTTTTCTCCTCCGCCCACCGCCGCTCCTCCGTCGGGAGGACCGGCCTCTCCAACTTCCTTGAAGAAAGCCAGAGGCAGACCTCCTGGCTCTAGCAAAAAGCAGCAGCTAGATGCTTTGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATTACCGTGAAAGCTGGAGAGGATGTTTCTTCGAAAATAATGTCATTTTCGCAGAATGGTTCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAACGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTATGAGGGGCGATTCGAGATTTTGTCACTATCTGGGTCATACCTCCTCTCTGAAAATGGCGGTCAGCGGAGCCGAACTGGGGGTCTAAGTGTTTCATTGTCTGGACCAGATGGTCGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTTCAGGTGGTGGTGGGGAGTTTCGTCACCGATGGGGGGCACAACGAATTGAAACAAGCAAACCAAATAGAACAGCCGCCTGTTACTGGACCACACAAACTTGCCCCGATCCGTGCTGGAATGTCGGGGGCGAGCAGCCCGCCATCGCGTGGGACTCTCAGTGAATCCTCAGGAGGGCCTGGCAGTCCGTTTAATCAGAGTGCTGGAGCCTGCAATAACACCATACCTTGGAAGTAA 1029 54.81 MSGSEAGVMTSSEPFTIGLQKSPVQSQQPVLQGMHLPFGADGVYKPVATASPTYHSSVVADGSAREAFVNMNTQSEPVKRKRGRPRKYGPDGSMALAPAVPSAAATQSSGGFSPPPTAAPPSGGPASPTSLKKARGRPPGSSKKQQLDALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGSRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHNELKQANQIEQPPVTGPHKLAPIRAGMSGASSPPSRGTLSESSGGPGSPFNQSAGACNNTIPWK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 418593 420957 + Lag0036691.1 Lac2g0053 597317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0053 342 MobiDBLite consensus disorder prediction 70 147 - -
Lac2g0053 342 Gene3D - 159 289 - -
Lac2g0053 342 SMART AT_hook_2 79 91 IPR017956 GO:0003677(InterPro)
Lac2g0053 342 SMART AT_hook_2 132 144 IPR017956 GO:0003677(InterPro)
Lac2g0053 342 FunFam AT-hook motif nuclear-localized protein 1-like 159 290 - -
Lac2g0053 342 ProSiteProfiles PPC domain profile profile. 153 293 IPR005175 -
Lac2g0053 342 CDD DUF296 158 272 IPR005175 -
Lac2g0053 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 326 IPR039605 GO:0003680(InterPro)
Lac2g0053 342 MobiDBLite consensus disorder prediction 283 342 - -
Lac2g0053 342 MobiDBLite consensus disorder prediction 309 342 - -
Lac2g0053 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 273 IPR005175 -
Lac2g0053 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 276 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1743 Lac-Chr12:33386702 Lac2g0053 Lac-Chr2:418593 1.50E-61 dispersed
Lac2g0053 Lac-Chr2:418593 Lac5g0514 Lac-Chr5:5834969 1.20E-53 dispersed
Lac2g0047 Lac-Chr2:386167 Lac2g0053 Lac-Chr2:418593 1.30E-21 proximal
Lac2g0053 Lac-Chr2:418593 Lac6g0075 Lac-Chr6:678997 1.00E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0053 - - - 0.0