Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0067 ATGGTCGAAGTTTTGCAACTTATGGAGAATAAAACCGTTGCCATCATTGGCCCCCAATCTTCTGTGGTTGCTCACATTTCATCCCAAGTCGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTTCAGCTACAGATCCTACTCTCTCTGCACTTCAATTTCCCTTCTTTGTGAGGGCTGCACAAAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTGTTGATTTTTATGGTTGGAAAGAGGTTATTGCTATATATGTCGATGATGATTATGGGTGGAATGGTATTGCAACATTGGGTGATAAACTTTCCGAAAGGCGCTGTAAAATCACATATAAGGTGGGTATTAATCCAGAATCTGTGGGTAATCGAGCCCAAGTTATGGATCAACTTGTGAAAGTTGCACTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCGCGTTAGTCTTTTCAGTAGCCAAATACCTTCAAATGATGGGCAATGGATATGTATGGATAACAACTGATTGGCTTTCGTCTCTATTAGATAGTGTTGTTCCTCCCCCTCCTGAGGCCATGGAGTCGATGCAAGGAGTGCTTTCTTTACGCCAGCACACAGCAGACTCAGATAAAAAGAAAGCTTTTCTTTCCAGGTGGAATAAGTTAACTGGTGGCTCTTTAGGTCTGAATGCTTATGGTCAATATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATTGATAAATTTCTTAATCAAGGTGGGGTCATCACACATTCTAATGATTCCAAGCTGCATTTCAGTGAAGGCGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAATCGTCTGCTGAATAACATATTGGAGAGTGACTTTGTTGGTTTGACTGGTGCCATTAAGTTCGATTCTGGTAGATCCCTTGTTCATCCTGCATACGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTTGGTTACTGGTCCAACTATTCTGGTTTATCAATCGATGCTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCGCACGCAAATCAGAAGCTGTACGGGGTTATATGGCCAGGAAATACAATAGACACGCCTCGAGGATGGGTATTCCCAAACAACGGGAAGCTACTAAACATTGGAGTGCCACTTCGGGTCAGTTACAAGGAGTTTGTATCAAAAATCAAAGGGACAGACAATTTCCAAGGTTTCTGCATTGACGTGTTTACAGCTGCTGTAAACTTATTACCTTATGCTGTCCCGCACCGATTTACACCTTTTGGCAATGGCCGTGAGAATCCAAATTACACAGATCTTGTGTATGGAATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTACTTCTGGACTAGTTGTTGTGGCCCCAACCAAAAAACTGAACACTGGTGCTTGGGCTTTCCTGCATCCGTTTTCTCCAGCCATGTGGATGGTCACTGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCCGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAGAACACAATTAGCACTCTCGGCCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAATCAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGTTATATTCTCCAATCAATGGAATTGAAACCTTGAGGGAAGGTGATGAACCGATCGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTCAACATATCTAAATCTAGGCTTATTCCTCTTGGAACACCCGAAGCATATGCCAAGGCACTTGATCTTGGCCCTGACAAGAAGGGAGGTGTTGCTGCTATAGTTGATGAACTTCCATATGTGGAAAGTTTCCTGTCGAGACAGTGTACATTCAGAATTATTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCACGAGACTCTCCATTGGCTATAGATATGTCAACTGCCATTTTGCAGCTATCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCAGTACAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGCCTCTTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATACTGCTTTCAGATTATTCGTCAGCTATACCATTCTGATCCAAAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAACCGTCTTCGACGAATTATATCGATATTGGACGAGAAGAAAGAACCTTCTAAAAGGGAAAGCAAACGAAGGAAAGTTGAGAAATCATCTGAAAATGACAAGGACGATGATCATTTGGAGGTTAATCCTTGA 2493 42.28 MVEVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVDFYGWKEVIAIYVDDDYGWNGIATLGDKLSERRCKITYKVGINPESVGNRAQVMDQLVKVALMESRVMVLHVNPKLGALVFSVAKYLQMMGNGYVWITTDWLSSLLDSVVPPPPEAMESMQGVLSLRQHTADSDKKKAFLSRWNKLTGGSLGLNAYGQYAYDSVWVVAHAIDKFLNQGGVITHSNDSKLHFSEGGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDSGRSLVHPAYDIINVIGTGSRRVGYWSNYSGLSIDAPETLYSKPPNRSHANQKLYGVIWPGNTIDTPRGWVFPNNGKLLNIGVPLRVSYKEFVSKIKGTDNFQGFCIDVFTAAVNLLPYAVPHRFTPFGNGRENPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTTSGLVVVAPTKKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPINGIETLREGDEPIGFQVGSFAERYLSEELNISKSRLIPLGTPEAYAKALDLGPDKKGGVAAIVDELPYVESFLSRQCTFRIIGQEFTKSGWGFAFPRDSPLAIDMSTAILQLSENGDLQRIHDKWLVKSACSTELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYHSDPKESDLSSSSGSHSNRLRRIISILDEKKEPSKRESKRRKVEKSSENDKDDDHLEVNP 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 476672 480191 - Lag0036705.1 Lac2g0067 597331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0067 830 CDD PBP1_GABAb_receptor_plant 5 337 IPR044440 -
Lac2g0067 830 Gene3D - 493 620 - -
Lac2g0067 830 Gene3D - 3 311 - -
Lac2g0067 830 Gene3D - 690 723 - -
Lac2g0067 830 Pfam Ligand-gated ion channel 725 753 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac2g0067 830 Pfam Bacterial extracellular solute-binding proteins, family 3 395 503 IPR001638 -
Lac2g0067 830 FunFam Glutamate receptor 62 216 - -
Lac2g0067 830 PIRSF IGluLR_plant 1 829 IPR017103 -
Lac2g0067 830 Pfam Receptor family ligand binding region 3 321 IPR001828 -
Lac2g0067 830 SUPERFAMILY Periplasmic binding protein-like I 5 375 IPR028082 -
Lac2g0067 830 Gene3D - 62 336 - -
Lac2g0067 830 FunFam Glutamate receptor 494 624 - -
Lac2g0067 830 Gene3D - 654 689 - -
Lac2g0067 830 FunFam Glutamate receptor 620 728 - -
Lac2g0067 830 SUPERFAMILY Periplasmic binding protein-like II 360 726 - -
Lac2g0067 830 Gene3D - 381 492 - -
Lac2g0067 830 PRINTS Metabotropic glutamate GPCR signature 47 66 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac2g0067 830 PRINTS Metabotropic glutamate GPCR signature 66 82 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac2g0067 830 PRINTS Metabotropic glutamate GPCR signature 15 41 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac2g0067 830 PRINTS Metabotropic glutamate GPCR signature 82 99 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac2g0067 830 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 804 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lac2g0067 830 MobiDBLite consensus disorder prediction 795 830 - -
Lac2g0067 830 SMART GluR_14 384 726 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac2g0067 830 FunFam Glutamate receptor 378 494 - -
Lac2g0067 830 CDD GluR_Plant 381 724 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3096 Lac-Chr1:51418323 Lac2g0067 Lac-Chr2:476672 1.00E-296 dispersed
Lac2g0067 Lac-Chr2:476672 Lac9g2059 Lac-Chr9:40186303 7.60E-272 dispersed
Lac2g0067 Lac-Chr2:476672 Lac9g2058 Lac-Chr9:40164506 3.00E-244 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0067 K05387 - csv:101204862 1476.07