Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0075 ATGGAGTGGCAGAACCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGGCGATGGAGTTGGTGGGCTGTACGTCAAGGTGATGACGGATGAGCAAATGGAGCTCCTCAGGCAGCAGATCTCTGTCTATGCTTCCATTTGTGAGCAGCTTGTGGAGATGCACAAGGCAATCACAGCCCAGCAGGACCTTGCCGGAATGAGGCTAGGGAATCTATACTGTGATCCAATAATGGCATCTGCTGCTGGCCACAAGATAACTGCTAGGCAGAGGTGGACGCCGACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCAAGCAAGCAGAAGATCAAGGAAATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTGTATAATTGGTTTCAAAACAGAAGAGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAAATTATGAAAATTACATTTCTAAGTCGAGCAACATGTATTCTCAGAGATCTGATTTAGGTGCTGAAATGCTTTCCTTTGATGCACAATCAAATAAAGGGGAGCCCATGTTCCAGTCTTTCGGATCTGGTCATATCAGTCAGATGGCCCCAGCTCAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTACCAGACGGCTACACCCCTTACCATGCTTGTGAAGGATATCATTTGGTTGAGTGA 819 44.69 MEWQNQQQQNQTEQLQMQMQVEQLSNGDGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKEITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQNYENYISKSSNMYSQRSDLGAEMLSFDAQSNKGEPMFQSFGSGHISQMAPAQNHRNNLSNDKMNVPDGYTPYHACEGYHLVE 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 546263 547816 - Lag0036713.1 Lac2g0075 597339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0075 272 ProSiteProfiles 'Homeobox' domain profile. 94 159 IPR001356 GO:0003677(InterPro)
Lac2g0075 272 MobiDBLite consensus disorder prediction 156 188 - -
Lac2g0075 272 SMART HOX_1 96 163 IPR001356 GO:0003677(InterPro)
Lac2g0075 272 CDD homeodomain 98 160 IPR001356 GO:0003677(InterPro)
Lac2g0075 272 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 269 IPR044559 GO:0003700(InterPro)
Lac2g0075 272 Gene3D - 100 164 - -
Lac2g0075 272 Pfam Homeodomain 98 158 IPR001356 GO:0003677(InterPro)
Lac2g0075 272 MobiDBLite consensus disorder prediction 173 188 - -
Lac2g0075 272 SUPERFAMILY Homeodomain-like 97 160 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0075 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3374 Lac-Chr1:53346314 Lac2g0075 Lac-Chr2:546263 2.00E-12 dispersed
Lac2g0075 Lac-Chr2:546263 Lac5g0057 Lac-Chr5:496642 4.10E-65 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0287 . 40 238 Wox Gene Family AT3G18010 57.5 1.6e-50 197.6
Lac10g2499 . 4 240 Wox Gene Family AT3G03660 50.8 8.8e-45 178.3
Lac5g0057 . 1 276 Wox Gene Family AT4G35550 50.2 5.8e-64 241.9
Lac2g0075 . 1 188 Wox Gene Family AT4G35550 61.5 1.5e-56 217.2
Lac5g0057 . 34 160 Wox Gene Family AT1G20700 58.5 2.1e-37 153.3
Lac6g0285 . 10 167 Wox Gene Family AT1G46480 65.1 7.6e-50 194.5
Lac10g0287 . 40 238 Wox Gene Family AT3G18010 57.5 1.6e-50 197.6
Lac6g0285 . 10 167 Wox Gene Family AT1G46480 65.1 7.6e-50 194.5
Lac10g2499 . 4 240 Wox Gene Family AT3G03660 50.8 8.8e-45 178.3
Lac5g0057 . 1 276 Wox Gene Family AT4G35550 50.2 5.8e-64 241.9
Lac2g0075 . 1 188 Wox Gene Family AT4G35550 61.5 1.5e-56 217.2
Lac5g0057 . 34 160 Wox Gene Family AT1G20700 58.5 2.1e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23416 PF00046 Homeodomain 4.90E-18 CL0123 Lac TF