Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0113 ATGTCACCGCCGGCGAGGAGTAAGAGCTGGAACGGCGGCGTGGATAAGCATTATCCACCGGCGCTGGCCACCCATGATTCGGTTATTTCCGACCCCATTGCTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGAGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTTTTTAAGTTTTCTCCTACAACGACGAGTGCTTCCTTTGTATTGAGGAAACATTATCTAAGTCTTCTGTATCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGTTCCTCAAGGTGCCTGCCTTTTTGTTCTATTCGCTCCTTCCATTTTTTTTTTTACTTTATCCGTTTTTCCCACATCGGATTTTGCTGTAAATCTTAGTTGGGTTTTGTCTTCTTCTTCTTCTTCTTCTACAGCGCCATTCCCTTTTGGCAGCCCTACGAGTGAAAACGAATTGGCTCTGGTGGAATATACTCCCAAAACAACGTCGTTTTCGCCTGGTCCTCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAAGTGGGATCTGAAGTTCTGAGAGGAGTGCTTTACCATCCGGAGCAGCCAGCCCCGTCCGATCTACGGCCCGAGTCGACTAACGCCATTGTCCCGTACACCGGTGGCAGACATCGACATTCTGGTCGACGGCACCGGAGAAGCCGGAGAAAGGGAGACCCGAACCACCCGAAACCAAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTGAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTTAGTCCTGAAGAAAGGATGGTTTACCAAAACATTGGGCTGAAAGACAAGGAAAGATACAGAAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGATATTCATGCAGCTAACTATTCAAAGCATGGTGAGTAG 1098 46.63 MSPPARSKSWNGGVDKHYPPALATHDSVISDPIAFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQGACLFVLFAPSIFFFTLSVFPTSDFAVNLSWVLSSSSSSSTAPFPFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKVGSEVLRGVLYHPEQPAPSDLRPESTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRQATDIHAANYSKHGE 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 871713 873416 + Lag0036751.1 Lac2g0113 597377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0113 365 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Lac2g0113 365 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 279 346 IPR009071 -
Lac2g0113 365 MobiDBLite consensus disorder prediction 237 285 - -
Lac2g0113 365 SUPERFAMILY HMG-box 276 350 IPR036910 -
Lac2g0113 365 Pfam HMG (high mobility group) box 279 346 IPR009071 -
Lac2g0113 365 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Lac2g0113 365 MobiDBLite consensus disorder prediction 259 276 - -
Lac2g0113 365 Gene3D - 26 126 IPR036431 GO:0003677(InterPro)
Lac2g0113 365 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Lac2g0113 365 Gene3D High mobility group box domain 263 359 IPR036910 -
Lac2g0113 365 SUPERFAMILY ARID-like 29 127 IPR036431 GO:0003677(InterPro)
Lac2g0113 365 CDD HMG-box_AtHMGB9-like 279 345 - -
Lac2g0113 365 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677(InterPro)
Lac2g0113 365 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 357 - -
Lac2g0113 365 Coils Coil 335 355 - -
Lac2g0113 365 SMART hmgende2 278 347 IPR009071 -
Lac2g0113 365 SMART ARID_2 26 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0113 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2048 Lac-Chr12:37560497 Lac2g0113 Lac-Chr2:871713 8.60E-69 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g2048 . 19 385 ARID Transcription Factor Family AT1G04880 57.0 7.1e-107 385.2
Lac5g0024 . 209 479 ARID Transcription Factor Family AT1G20910 60.3 4.1e-90 329.3
Lac2g0048 . 141 384 ARID Transcription Factor Family AT1G20910 56.6 3.9e-77 286.2
Lac2g0113 . 16 350 ARID Transcription Factor Family AT1G76110 59.2 1.3e-105 380.6
Lac5g0024 . 188 509 ARID Transcription Factor Family AT1G76510 59.6 3.3e-109 392.9
Lac2g0048 . 126 414 ARID Transcription Factor Family AT1G76510 60.5 8.2e-100 361.7
Lac12g2513 . 2 772 ARID Transcription Factor Family AT3G43240 59.2 2.4e-264 909.1
Lac4g3061 . 5 776 ARID Transcription Factor Family AT3G43240 57.7 1.4e-261 899.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23419 PF01388 ARID 2.40E-18 CL0123 Lac TR