Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0113 ATGTCACCGCCGGCGAGGAGTAAGAGCTGGAACGGCGGCGTGGATAAGCATTATCCACCGGCGCTGGCCACCCATGATTCGGTTATTTCCGACCCCATTGCTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGAGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTTTTTAAGTTTTCTCCTACAACGACGAGTGCTTCCTTTGTATTGAGGAAACATTATCTAAGTCTTCTGTATCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGTTCCTCAAGGTGCCTGCCTTTTTGTTCTATTCGCTCCTTCCATTTTTTTTTTTACTTTATCCGTTTTTCCCACATCGGATTTTGCTGTAAATCTTAGTTGGGTTTTGTCTTCTTCTTCTTCTTCTTCTACAGCGCCATTCCCTTTTGGCAGCCCTACGAGTGAAAACGAATTGGCTCTGGTGGAATATACTCCCAAAACAACGTCGTTTTCGCCTGGTCCTCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAAGTGGGATCTGAAGTTCTGAGAGGAGTGCTTTACCATCCGGAGCAGCCAGCCCCGTCCGATCTACGGCCCGAGTCGACTAACGCCATTGTCCCGTACACCGGTGGCAGACATCGACATTCTGGTCGACGGCACCGGAGAAGCCGGAGAAAGGGAGACCCGAACCACCCGAAACCAAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTGAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTTAGTCCTGAAGAAAGGATGGTTTACCAAAACATTGGGCTGAAAGACAAGGAAAGATACAGAAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGATATTCATGCAGCTAACTATTCAAAGCATGGTGAGTAG 1098 46.63 MSPPARSKSWNGGVDKHYPPALATHDSVISDPIAFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQGACLFVLFAPSIFFFTLSVFPTSDFAVNLSWVLSSSSSSSTAPFPFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKVGSEVLRGVLYHPEQPAPSDLRPESTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRQATDIHAANYSKHGE 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 871713 873416 + Lag0036751.1 Lac2g0113 597377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0113 365 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Lac2g0113 365 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 279 346 IPR009071 -
Lac2g0113 365 MobiDBLite consensus disorder prediction 237 285 - -
Lac2g0113 365 SUPERFAMILY HMG-box 276 350 IPR036910 -
Lac2g0113 365 Pfam HMG (high mobility group) box 279 346 IPR009071 -
Lac2g0113 365 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Lac2g0113 365 MobiDBLite consensus disorder prediction 259 276 - -
Lac2g0113 365 Gene3D - 26 126 IPR036431 GO:0003677(InterPro)
Lac2g0113 365 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Lac2g0113 365 Gene3D High mobility group box domain 263 359 IPR036910 -
Lac2g0113 365 SUPERFAMILY ARID-like 29 127 IPR036431 GO:0003677(InterPro)
Lac2g0113 365 CDD HMG-box_AtHMGB9-like 279 345 - -
Lac2g0113 365 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677(InterPro)
Lac2g0113 365 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 357 - -
Lac2g0113 365 Coils Coil 335 355 - -
Lac2g0113 365 SMART hmgende2 278 347 IPR009071 -
Lac2g0113 365 SMART ARID_2 26 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2048 Lac-Chr12:37560497 Lac2g0113 Lac-Chr2:871713 8.60E-69 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23419 PF01388 ARID 2.40E-18 CL0123 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0113 - - - 0.0