Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0114 ATGGCCCGAAAAGAAGATGTAATCCTCAAGATCAACAGTTTCAGAAATGGAGGCAACAAGGAATTAGAGGAGAAGAAGTTTCAGGGTTTATCAGAAAGATCCGCACAACCCATGAGACGAAGAGGTAAAGAATTTTCAGACCCGGAAAATCGCCGGCCGTCGTCGGGTTCTGGTGGCGGCGAGGTGCTCCGTTGCAGTTCCAACGCTTCATTTCGTGGAAGTTCATGGAGCTCACCGATTAGCAAGAAGTCTCGCTTGATGGATCCTCCCGAGGAAGATTCTTCTCAGAAGCTGGAATCCGCCGTGAAAGATGAAGTTGGTGGTTTTTGTTTTGTTATAGTGGGTTTGATTTGTAATCGATGGATTTCAATCTTGAAGAGGGAGACATTTTGGGGTCTTCCGTTGTGGAAATGGGAATTGACTGTTCTAGCGGTAATCTGTGGACATTTTGTTTCGATTTTGGCCGTTCGATTGATGGTGAAAATCATCGAGATGAATTTTCTGTTGAGGAAACGGGTTCTGTATTTTGTTTATGGGTTGAGGAAGGCTGTAGAAAATTGCATGTGGGTGTCTCTGATTTTGCTTGTTTGGCATTTCATCTTCAATGACAAGGTTCAGAGAAAGACGCAGAGTAAGATTTTACCTTATGTAACCAAGATTTTGATCTGTTTTCTCGTGGGTGCTTCGATATGGCTTCTGAAAACGCTCGTCATTAAGATCCTGGCTTCGTTTTTCCACGTTAATAACTACTTTGAAAGGCTTAAGGAGGCTTTGTTCAGTCAGTATGTGATTGTGACGCTCTCTGGTTTGCCATTGTTCGAGAGGCCGAATACGAAAGATGTGATGAAGGAAGATCAGAATGTCGATGGAAGAGAAGAAAGTCCTAAAAGTGGGAGAGTTATTTGCAGTGGGAGACTCGTAAATTGCAATGGGTCGAGATCATTGAAGCCGGAATCAGTTAAACAAGATGAGGAAATCCCAGTTGATCAATTGAATAAACTGAACCAGAAGAATATATCAGCTTGGAATATGAGGAGAATGGTGAATATTGTAAGAAATGGAGCTTTGCTAACTCTGGATGAGAAGATACTGTCAGAAACGAAAGGAGAATCTTTGTTGCAGATTAGGAGTGAACGCCAGGCGAAAGAGGTAGCTGGGAAGATATTCCAGCGAGTGACCCAACGTGGATCGGATTGTATTTATTTGGAAGATGTAATGCGATTTATGAATAAAGAGGAAGCTCTAATGACCATGAGTTCATTTGGAATAACCGCCGAAACTCAATGCATTGATGAGTCCTCTTTTAGAGAGTGGATGGTAAATGCATTTAAGCAGAGAAAAGTTCTTGTATTATCTCTCAATGATGCAAATACAGCTGTTGAAGATCTTCACAACTTGCTAAACATCTTTGTAGTTATAACAATTTTGGTAATCTGGCTTATCATATTAGGAACTCCCATCCTGCACTTCCTCATCTTCATAACTTCACAGCTTCTTCTGCTGGTTTTTATTTTTGGCAACACATGTAAGACAGTCTTTGAAGCTATCATTTTCTTGTTTGTGATGCACCCATTCGACGTCGGCGATCGCTGCGAAGTGGATGGCGTCCAGATGGTTGTTGAAGAGATGAAGATATTAACAACCGTTTTCCTGAGATATGACAACCAGAAGATCACTTACCCCAACAGTGTGCTTGCTACCAAGGCCATTGGCAATTTCTACCGCAGTCCAGACATGGGAGATGGAGTTGATTTCTACGTCCACATCTCAACTCCATGGGAAAAAGTTGCCCTTTTGAAAGAACGGATAACAAGGTACGTAGAGAGTATGAGTGAGCAATGGCACCCAGATCCACAGATTATAATGAAAGATGTTGAAGATTTGGACAAGACGGGAAGAAAATTAGCAGCCGCCGGTGACGGTTTTCGTGTGGGAACCGAGACGTCTTCTTGCCGGCGTGGTTCTTTGTTTAGTCGCCGGGGTGTGGGTCTCAGTTCAGCATCAGTGAGACGCGGTTTAGCACTGTTGTCGGTCTCAGTTCAGGAACGTCATGGGCCTCGTTATTGGAGGCTGAAACGCGCTGTGGTTGTTTCGTTTGAAGCTCAAATTGATCAAGATTTGAGTTCAGTTGTAGATAAAATAGGGATGAAGGAGGAAGGAGATGAAACGATTAAGTCCATCAGCAAAGAAGAAGAGAATGTGCTAGGTTACCACAGCAATAATGTGAAGAAAGTTAGGTTAAATTCAACTCTCGTCGCTCTGCTCGATGATCCTATCCTCGCCGATGTCCCCAAGAATCCAACCTTATCGGACGTCGATACGCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCCGTCTGCAAGCTTGACGGCACCACCATTGATTTGGTGATTATGAATTCCGCGACATTGAAGGACTTGAAGCTTGCAATCAAGAAGAAAGTAAACGAGATGGAGCAATCCAAGATGGGACATCGCCACATTTCATGGAAGCATGTGTGGGCAAATTTTTGTCTAGCATACCACAACGAAAAGCTTCTTGACGATAGCTCTGCGCTTCAAGATTTTGGAATCCGCAACAATTCTCAGGTGCATTTTGTCGAATACGTTGTGTCAAAGAACTCGAAAAGGCATTCTAGAAGGAGGAAACACCAATTCTTTCACGGTCTCAACAAGTGCGCATGA 2691 43.48 MARKEDVILKINSFRNGGNKELEEKKFQGLSERSAQPMRRRGKEFSDPENRRPSSGSGGGEVLRCSSNASFRGSSWSSPISKKSRLMDPPEEDSSQKLESAVKDEVGGFCFVIVGLICNRWISILKRETFWGLPLWKWELTVLAVICGHFVSILAVRLMVKIIEMNFLLRKRVLYFVYGLRKAVENCMWVSLILLVWHFIFNDKVQRKTQSKILPYVTKILICFLVGASIWLLKTLVIKILASFFHVNNYFERLKEALFSQYVIVTLSGLPLFERPNTKDVMKEDQNVDGREESPKSGRVICSGRLVNCNGSRSLKPESVKQDEEIPVDQLNKLNQKNISAWNMRRMVNIVRNGALLTLDEKILSETKGESLLQIRSERQAKEVAGKIFQRVTQRGSDCIYLEDVMRFMNKEEALMTMSSFGITAETQCIDESSFREWMVNAFKQRKVLVLSLNDANTAVEDLHNLLNIFVVITILVIWLIILGTPILHFLIFITSQLLLLVFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEVDGVQMVVEEMKILTTVFLRYDNQKITYPNSVLATKAIGNFYRSPDMGDGVDFYVHISTPWEKVALLKERITRYVESMSEQWHPDPQIIMKDVEDLDKTGRKLAAAGDGFRVGTETSSCRRGSLFSRRGVGLSSASVRRGLALLSVSVQERHGPRYWRLKRAVVVSFEAQIDQDLSSVVDKIGMKEEGDETIKSISKEEENVLGYHSNNVKKVRLNSTLVALLDDPILADVPKNPTLSDVDTLISLELGSAMRISVCKLDGTTIDLVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAYHNEKLLDDSSALQDFGIRNNSQVHFVEYVVSKNSKRHSRRRKHQFFHGLNKCA 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 874236 880388 - Lag0036752.1 Lac2g0114 597378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0114 896 Pfam Mechanosensitive ion channel, beta-domain 517 573 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac2g0114 896 SUPERFAMILY Ubiquitin-like 779 875 IPR029071 -
Lac2g0114 896 CDD Ubl_SNRNP25 783 869 IPR040610 -
Lac2g0114 896 Gene3D - 778 880 - -
Lac2g0114 896 Gene3D - 524 573 IPR023408 -
Lac2g0114 896 MobiDBLite consensus disorder prediction 60 82 - -
Lac2g0114 896 Pfam Ubiquitin-like domain 784 871 IPR040610 -
Lac2g0114 896 MobiDBLite consensus disorder prediction 20 94 - -
Lac2g0114 896 SUPERFAMILY Sm-like ribonucleoproteins 514 573 IPR010920 -
Lac2g0114 896 MobiDBLite consensus disorder prediction 20 50 - -
Lac2g0114 896 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 78 630 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lac2g0114 896 FunFam Predicted mechanosensitive ion channel 524 573 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0114 K22048 - - mdm:103410417 673.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0114 Lac-Chr2:874236 Lac9g1858 Lac-Chr9:38358597 3.90E-165 dispersed
Lac2g0114 Lac-Chr2:874236 Lac3g1066 Lac-Chr3:8737565 1.80E-117 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0215 . 153 543 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.6e-152 537.0
Lac7g0217 . 16 269 Mechanosensitive Ion Channel Family AT4G00290 63.0 2.8e-88 323.6
Lac5g1819 . 66 716 Mechanosensitive Ion Channel Family AT5G10490 59.8 1.7e-197 686.8
Lac6g1003 . 9 710 Mechanosensitive Ion Channel Family AT5G10490 53.9 2.2e-189 659.8
Lac6g1003 . 9 501 Mechanosensitive Ion Channel Family AT1G58200 68.4 6.8e-194 674.9
Lac5g1819 . 32 684 Mechanosensitive Ion Channel Family AT1G58200 52.5 1.0e-173 607.8
Lac9g1858 . 47 935 Mechanosensitive Ion Channel Family AT1G53470 56.0 3.5e-267 918.7
Lac9g1858 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 54.0 4.4e-251 865.1
Lac9g1858 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.5 4.7e-293 1004.6
Lac4g1220 . 62 923 Mechanosensitive Ion Channel Family AT1G78610 53.7 1.0e-242 837.4
Lac2g0114 . 88 629 Mechanosensitive Ion Channel Family AT1G78610 51.1 2.2e-149 527.3
Lac9g1858 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.5 1.1e-238 823.9
Lac4g1220 . 272 926 Mechanosensitive Ion Channel Family AT2G17000 55.8 2.2e-202 703.4
Lac9g1858 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 51.0 1.8e-162 570.5
Lac2g0488 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 52.6 7.2e-181 631.7
Lac3g1066 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.8 1.4e-200 697.2
Lac2g0488 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 55.9 2.1e-196 683.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016415 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 1 1 0 0 8