Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0114 ATGGCCCGAAAAGAAGATGTAATCCTCAAGATCAACAGTTTCAGAAATGGAGGCAACAAGGAATTAGAGGAGAAGAAGTTTCAGGGTTTATCAGAAAGATCCGCACAACCCATGAGACGAAGAGGTAAAGAATTTTCAGACCCGGAAAATCGCCGGCCGTCGTCGGGTTCTGGTGGCGGCGAGGTGCTCCGTTGCAGTTCCAACGCTTCATTTCGTGGAAGTTCATGGAGCTCACCGATTAGCAAGAAGTCTCGCTTGATGGATCCTCCCGAGGAAGATTCTTCTCAGAAGCTGGAATCCGCCGTGAAAGATGAAGTTGGTGGTTTTTGTTTTGTTATAGTGGGTTTGATTTGTAATCGATGGATTTCAATCTTGAAGAGGGAGACATTTTGGGGTCTTCCGTTGTGGAAATGGGAATTGACTGTTCTAGCGGTAATCTGTGGACATTTTGTTTCGATTTTGGCCGTTCGATTGATGGTGAAAATCATCGAGATGAATTTTCTGTTGAGGAAACGGGTTCTGTATTTTGTTTATGGGTTGAGGAAGGCTGTAGAAAATTGCATGTGGGTGTCTCTGATTTTGCTTGTTTGGCATTTCATCTTCAATGACAAGGTTCAGAGAAAGACGCAGAGTAAGATTTTACCTTATGTAACCAAGATTTTGATCTGTTTTCTCGTGGGTGCTTCGATATGGCTTCTGAAAACGCTCGTCATTAAGATCCTGGCTTCGTTTTTCCACGTTAATAACTACTTTGAAAGGCTTAAGGAGGCTTTGTTCAGTCAGTATGTGATTGTGACGCTCTCTGGTTTGCCATTGTTCGAGAGGCCGAATACGAAAGATGTGATGAAGGAAGATCAGAATGTCGATGGAAGAGAAGAAAGTCCTAAAAGTGGGAGAGTTATTTGCAGTGGGAGACTCGTAAATTGCAATGGGTCGAGATCATTGAAGCCGGAATCAGTTAAACAAGATGAGGAAATCCCAGTTGATCAATTGAATAAACTGAACCAGAAGAATATATCAGCTTGGAATATGAGGAGAATGGTGAATATTGTAAGAAATGGAGCTTTGCTAACTCTGGATGAGAAGATACTGTCAGAAACGAAAGGAGAATCTTTGTTGCAGATTAGGAGTGAACGCCAGGCGAAAGAGGTAGCTGGGAAGATATTCCAGCGAGTGACCCAACGTGGATCGGATTGTATTTATTTGGAAGATGTAATGCGATTTATGAATAAAGAGGAAGCTCTAATGACCATGAGTTCATTTGGAATAACCGCCGAAACTCAATGCATTGATGAGTCCTCTTTTAGAGAGTGGATGGTAAATGCATTTAAGCAGAGAAAAGTTCTTGTATTATCTCTCAATGATGCAAATACAGCTGTTGAAGATCTTCACAACTTGCTAAACATCTTTGTAGTTATAACAATTTTGGTAATCTGGCTTATCATATTAGGAACTCCCATCCTGCACTTCCTCATCTTCATAACTTCACAGCTTCTTCTGCTGGTTTTTATTTTTGGCAACACATGTAAGACAGTCTTTGAAGCTATCATTTTCTTGTTTGTGATGCACCCATTCGACGTCGGCGATCGCTGCGAAGTGGATGGCGTCCAGATGGTTGTTGAAGAGATGAAGATATTAACAACCGTTTTCCTGAGATATGACAACCAGAAGATCACTTACCCCAACAGTGTGCTTGCTACCAAGGCCATTGGCAATTTCTACCGCAGTCCAGACATGGGAGATGGAGTTGATTTCTACGTCCACATCTCAACTCCATGGGAAAAAGTTGCCCTTTTGAAAGAACGGATAACAAGGTACGTAGAGAGTATGAGTGAGCAATGGCACCCAGATCCACAGATTATAATGAAAGATGTTGAAGATTTGGACAAGACGGGAAGAAAATTAGCAGCCGCCGGTGACGGTTTTCGTGTGGGAACCGAGACGTCTTCTTGCCGGCGTGGTTCTTTGTTTAGTCGCCGGGGTGTGGGTCTCAGTTCAGCATCAGTGAGACGCGGTTTAGCACTGTTGTCGGTCTCAGTTCAGGAACGTCATGGGCCTCGTTATTGGAGGCTGAAACGCGCTGTGGTTGTTTCGTTTGAAGCTCAAATTGATCAAGATTTGAGTTCAGTTGTAGATAAAATAGGGATGAAGGAGGAAGGAGATGAAACGATTAAGTCCATCAGCAAAGAAGAAGAGAATGTGCTAGGTTACCACAGCAATAATGTGAAGAAAGTTAGGTTAAATTCAACTCTCGTCGCTCTGCTCGATGATCCTATCCTCGCCGATGTCCCCAAGAATCCAACCTTATCGGACGTCGATACGCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTCCGTCTGCAAGCTTGACGGCACCACCATTGATTTGGTGATTATGAATTCCGCGACATTGAAGGACTTGAAGCTTGCAATCAAGAAGAAAGTAAACGAGATGGAGCAATCCAAGATGGGACATCGCCACATTTCATGGAAGCATGTGTGGGCAAATTTTTGTCTAGCATACCACAACGAAAAGCTTCTTGACGATAGCTCTGCGCTTCAAGATTTTGGAATCCGCAACAATTCTCAGGTGCATTTTGTCGAATACGTTGTGTCAAAGAACTCGAAAAGGCATTCTAGAAGGAGGAAACACCAATTCTTTCACGGTCTCAACAAGTGCGCATGA 2691 43.48 MARKEDVILKINSFRNGGNKELEEKKFQGLSERSAQPMRRRGKEFSDPENRRPSSGSGGGEVLRCSSNASFRGSSWSSPISKKSRLMDPPEEDSSQKLESAVKDEVGGFCFVIVGLICNRWISILKRETFWGLPLWKWELTVLAVICGHFVSILAVRLMVKIIEMNFLLRKRVLYFVYGLRKAVENCMWVSLILLVWHFIFNDKVQRKTQSKILPYVTKILICFLVGASIWLLKTLVIKILASFFHVNNYFERLKEALFSQYVIVTLSGLPLFERPNTKDVMKEDQNVDGREESPKSGRVICSGRLVNCNGSRSLKPESVKQDEEIPVDQLNKLNQKNISAWNMRRMVNIVRNGALLTLDEKILSETKGESLLQIRSERQAKEVAGKIFQRVTQRGSDCIYLEDVMRFMNKEEALMTMSSFGITAETQCIDESSFREWMVNAFKQRKVLVLSLNDANTAVEDLHNLLNIFVVITILVIWLIILGTPILHFLIFITSQLLLLVFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEVDGVQMVVEEMKILTTVFLRYDNQKITYPNSVLATKAIGNFYRSPDMGDGVDFYVHISTPWEKVALLKERITRYVESMSEQWHPDPQIIMKDVEDLDKTGRKLAAAGDGFRVGTETSSCRRGSLFSRRGVGLSSASVRRGLALLSVSVQERHGPRYWRLKRAVVVSFEAQIDQDLSSVVDKIGMKEEGDETIKSISKEEENVLGYHSNNVKKVRLNSTLVALLDDPILADVPKNPTLSDVDTLISLELGSAMRISVCKLDGTTIDLVIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWANFCLAYHNEKLLDDSSALQDFGIRNNSQVHFVEYVVSKNSKRHSRRRKHQFFHGLNKCA 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 874236 880388 - Lag0036752.1 Lac2g0114 597378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0114 896 Pfam Mechanosensitive ion channel, beta-domain 517 573 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac2g0114 896 SUPERFAMILY Ubiquitin-like 779 875 IPR029071 -
Lac2g0114 896 CDD Ubl_SNRNP25 783 869 IPR040610 -
Lac2g0114 896 Gene3D - 778 880 - -
Lac2g0114 896 Gene3D - 524 573 IPR023408 -
Lac2g0114 896 MobiDBLite consensus disorder prediction 60 82 - -
Lac2g0114 896 Pfam Ubiquitin-like domain 784 871 IPR040610 -
Lac2g0114 896 MobiDBLite consensus disorder prediction 20 94 - -
Lac2g0114 896 SUPERFAMILY Sm-like ribonucleoproteins 514 573 IPR010920 -
Lac2g0114 896 MobiDBLite consensus disorder prediction 20 50 - -
Lac2g0114 896 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 78 630 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lac2g0114 896 FunFam Predicted mechanosensitive ion channel 524 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0114 Lac-Chr2:874236 Lac9g1858 Lac-Chr9:38358597 3.90E-165 dispersed
Lac2g0114 Lac-Chr2:874236 Lac3g1066 Lac-Chr3:8737565 1.80E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0114 K22048 - mdm:103410417 673.315