Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0115 ATGGCGATGGACGATACCGAGAGCTGTAGTAGTAGAGCGGTGGATGATTTTTCCGCTCAGACTTGGAGGCAGAAGCAGAAGGTTGATGTTTACGATGAAGTTCTTCGTCGACTCCGGCTGTCGCACGAGGCGGAGACAAGCCTTCCTGGTTTTGAGGATGAACTTTGGGCTCATTTTCATCGTCTTCCTACTAGGTATGCTATGGACGTCAACGTAGAGAGAGCTGAAGACGTTCTTGTGCACAAAAATCTTCTCTACATGGCGCATGATCCTGCTACTCGACCTGCAATTGATGTTCGTCTCGTACAGGTTCATTCATCTCCTGGCAGAAACTCTGGCAACTCTGCTCATTCGATATTGAAGGAAAACGTGGACCAGCGGTTTTTGGATTACGGCAGCAATCAGAGACACCACCCGCCACCAGCATTTGGTTCATCAACAGAGGTCGAATATGGTTTCGAGACCAGCCAATTACATGATATAGATCAGCCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAATTACTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACGGCAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGCCAATTGAGGATACCAAGCAGCTAAAAAATATACTGGCTGAAGAAATATCAAATATTCAGAAAAGGCATCCTCCTTTTCCACCTTGGAGCATTTCCCCTACTGGAAAGAAAGACAAAATTGGAGTCAAGTTCATCACAAAGAATGTCAACATTCCAAGGGACGAAGTTGACATATGGGAAATTGATGCGAGCCTGTTAATATTTGAGAGGAAAATTGCATCTGGATCTTTTAGTGACTTGTATAAAGGCACTCTGTATGGTCAAGATGTGGCTATTAAGCTACTAAAAGATGAAAACTTAAATGAGACTGTACGGCGGGAGTTTGGTCAAGAAATTCATATCATGAGAAAAATTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATGTACCAGACCTCCAAGCTTTTGCATTGTCACAGAATACATGTCTGGTGGAAGTATGCACGACTTTTTACATCAACAAAAGGGCGTTCTTAGTCTTCCATCCTTACTAAGAGTGGCAGTTGATGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATCCATAGAGATTTGAAAGCTGCAAACCTTTTGATGGACGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCCAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCTGAGGTTATTGAGCACAAACCTTATGATCATAAAGCTGATGTTTATAGCTTTGGAATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGATAACCTGTCTCCTTTACAAGCAGCAATAGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATCCCGAGGCATGCTGATCCAACGATCGTGGACTTGCTTGAGAAATGTTGGCTGCAGGATCCATCCTTGAGACCTGAATTTTCTGAATTACCAAAGTTTTGCAGCAGAGGATCAAGCAGATTACATAATAAGAAATTGAGGAGTGGCAGGAGTCATCTGGAAGACGATCAAATTTTTGGGCAAGAGCAGGGCGTTCTGTGGAGAGGCGAGAAGGATACAGGTCCTAACTGCATGCAATTATCTATCCATATGTTGTGA 1764 43.54 MAMDDTESCSSRAVDDFSAQTWRQKQKVDVYDEVLRRLRLSHEAETSLPGFEDELWAHFHRLPTRYAMDVNVERAEDVLVHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNSGNSAHSILKENVDQRFLDYGSNQRHHPPPAFGSSTEVEYGFETSQLHDIDQPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTADGFSLDVFVVDGWPIEDTKQLKNILAEEISNIQKRHPPFPPWSISPTGKKDKIGVKFITKNVNIPRDEVDIWEIDASLLIFERKIASGSFSDLYKGTLYGQDVAIKLLKDENLNETVRREFGQEIHIMRKIRHKNVVQFIGACTRPPSFCIVTEYMSGGSMHDFLHQQKGVLSLPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGQLPYDNLSPLQAAIGVVQKGLRPKIPRHADPTIVDLLEKCWLQDPSLRPEFSELPKFCSRGSSRLHNKKLRSGRSHLEDDQIFGQEQGVLWRGEKDTGPNCMQLSIHML 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 887787 893935 - Lag0036753.1 Lac2g0115 597379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0115 587 Coils Coil 223 243 - -
Lac2g0115 587 FunFam Serine/threonine-protein kinase isoform 1 276 365 - -
Lac2g0115 587 Gene3D - 171 243 - -
Lac2g0115 587 SMART serkin_6 287 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 SUPERFAMILY ACT-like 171 236 IPR045865 -
Lac2g0115 587 PRINTS Tyrosine kinase catalytic domain signature 444 454 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 PRINTS Tyrosine kinase catalytic domain signature 507 529 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 PRINTS Tyrosine kinase catalytic domain signature 398 416 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 PRINTS Tyrosine kinase catalytic domain signature 361 374 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 FunFam Receptor tyrosine-protein kinase erbB-2 364 546 - -
Lac2g0115 587 ProSiteProfiles ACT domain profile. 173 251 IPR002912 -
Lac2g0115 587 ProSiteProfiles Protein kinase domain profile. 287 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 Gene3D Transferase(Phosphotransferase) domain 1 366 575 - -
Lac2g0115 587 SUPERFAMILY Protein kinase-like (PK-like) 270 533 IPR011009 -
Lac2g0115 587 PANTHER SERINE-THREONINE PROTEIN KINASE 143 532 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac2g0115 587 Pfam Protein tyrosine and serine/threonine kinase 288 532 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0115 587 Gene3D Phosphorylase Kinase; domain 1 280 365 - -
Lac2g0115 587 CDD STKc_MAP3K-like 293 532 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0115 Lac-Chr2:887787 Lac4g1223 Lac-Chr4:29872632 1.00E-201 dispersed
Lac2g0487 Lac-Chr2:3545490 Lac2g0115 Lac-Chr2:887787 3.40E-45 transposed
Lac2g1838 Lac-Chr2:18401703 Lac2g0115 Lac-Chr2:887787 2.50E-17 transposed
Lac2g0115 Lac-Chr2:887787 Lac5g0072 Lac-Chr5:625725 1.30E-188 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85972 PF07714 PK_Tyr_Ser-Thr 5.70E-74 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0115 - - - 0.0