Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0162 ATGGGCTCTGTGGAAGAGAAGCTCAAGACAACTGGGGGTTTGATTAATAACGGGTCACAGACTAACCTTCTTGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCACGCTTGTGCTGGTCCTCTTGTTTCCTTGCCTCATGTGGGGAGTCTCGTTTATTACTTTTCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACGGCAACCTCACAGATTCCAAACTATCCAAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCCTAGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAACGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACCAGCACACATGGTGGATTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCTCCAACTCAGGAGCTCGTTGTCCGAGACTTGCATGACAATACCTGGACTTTCCGCCACATATATCGCGGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGACTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAATCACAGTTGCTCATCGGAGTGAGGCGTGCTAACAGACAACAAACAACTTTGCCATCATCGGTTCTATCTGCTGATAGTATGCATATTGGGGTTCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGGAGTCCATTCACAATCTTTTACAACCCCAGGGCATGCCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCGGGTAAACGCCGATATATGGGTACAATTGTTGGAATCAGCGATTTAGATCCACTTAGGTGGCCAGGATCCAAGTGGCGAAATCTTCAGGTGGAGTGGGATGAGCCAGGGTGCTGCGATAAGCAAAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTAAAACGTCCATTACACGGTGGATTTTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATGTACGTGGGGATCTTTCATACGCTGGGCCAACTCTATGCTCCGAGCCACTGATGAAGATGCTACTGAGGCCTCAACTGGTTAACCTTCACGGAGCCTCCTTACAGCAGGATTCAGTCAACAATTTATTTAAGTTACAGGACATGAAGGGCATGCAGCCAGTAAACAATCCCAAAATGCAGCCGCAGCAGCAGCTTATACCGTCAGAAACTGCATCTCCTCAGAGTCAAAATCATCATCATCTAGTACCTACGCCATCTGATCCCATAAACTCAAATTCATCACCAAAAGAAAATCTACCAGGAAAAGTACACCCTCCTTCGGCCATCGAAAGTGAAACTCCAACTGGAGTTGATGTAGACAAGGCAAAATATGAACGGGATATTTCAAACAACCAGTCTAATCCATTGCCTCCGGTTGGAGATTGTGGGGAGGAAAAACTCACCGGTAACGATGTAAATATGCAGACACTTGTGAACCAGCTTTCGTTTGTGAACCAGAATCAGATCCCCATGCAGTTGCAATCCGTATCATGGCCCATGCAGCCTCAGCTGGAGTCACTAATCCAACATCCACAACCAATTGACATGCCTCAGCCTGAATTTACGAATGCAAATGGTTTGATTTCATCCCTGGATGGCGATGGATGTTTGATTAACCCAGCTTGTCTACCCCTTCCTGGAGTGATGAGGTCGCCAGGGAATCTTTCTATGTTGGGATTGCAAGACTCCTCAACAGTGTTTCCCGAGGCTCTTAATTTTCCCTTGCCCTCTACGGGTCAAGACATGTGGGATCCTCTAAATAATATGAGGTTCTCATCTCAAACCAATCATCTCGTCTCATTCTCCCATCCTGACGCATCTAACCTGAACTGTATGGCTAATGCAAATGTTATGAGAGATGTTTCAGATGAGAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACATTGAAATCAGTAACGGTGGAAGCACTTTGGTTGATCCTGCTGTTTCAAGCACCATTCTTGATGATTATTGCACATTGAAAGATGCCGATTTCCCACACCCTACAGATTGCTTGGCTGGGAACTTCAGTTCTAGCCAAGATGTCCAGTCTCAGATTACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCATGCAATGTGGATTTTGATGATGGCAGTCTTCTGCAGAATGGTTCATGGAAGCAAGTGGTACCACCCATGAGAACTTACACGAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACAAGTTTTAAGAACTACGACGAACTATGCTCTGCTATAGAATGTATGTTTGGACTTGAAGGGCTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTCTTGCTTATTGGTGATGATCCCTGGGAGGAATTTGTTAGCTGCGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCTCCATGTCAGAAGGTGGCCGAGCTTAA 2862 45.7 MGSVEEKLKTTGGLINNGSQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFSQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENVRGDLSYAGPTLCSEPLMKMLLRPQLVNLHGASLQQDSVNNLFKLQDMKGMQPVNNPKMQPQQQLIPSETASPQSQNHHHLVPTPSDPINSNSSPKENLPGKVHPPSAIESETPTGVDVDKAKYERDISNNQSNPLPPVGDCGEEKLTGNDVNMQTLVNQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPIDMPQPEFTNANGLISSLDGDGCLINPACLPLPGVMRSPGNLSMLGLQDSSTVFPEALNFPLPSTGQDMWDPLNNMRFSSQTNHLVSFSHPDASNLNCMANANVMRDVSDESNNQSGIYSCSNIEISNGGSTLVDPAVSSTILDDYCTLKDADFPHPTDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDDGSLLQNGSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSMSEGGRA 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1232499 1237115 + Lag0036800.1 Lac2g0162 597426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0162 953 SUPERFAMILY CAD & PB1 domains 837 918 - -
Lac2g0162 953 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677(InterPro)
Lac2g0162 953 FunFam Auxin response factor 835 928 - -
Lac2g0162 953 FunFam Auxin response factor 313 385 - -
Lac2g0162 953 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677(InterPro)
Lac2g0162 953 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 931 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac2g0162 953 FunFam Auxin response factor 147 251 - -
Lac2g0162 953 Gene3D - 313 385 - -
Lac2g0162 953 MobiDBLite consensus disorder prediction 473 539 - -
Lac2g0162 953 MobiDBLite consensus disorder prediction 475 520 - -
Lac2g0162 953 SMART B3_2 149 251 IPR003340 GO:0003677(InterPro)
Lac2g0162 953 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Lac2g0162 953 Pfam AUX/IAA family 884 927 IPR033389 -
Lac2g0162 953 CDD B3_DNA 148 249 IPR003340 GO:0003677(InterPro)
Lac2g0162 953 Gene3D - 147 250 IPR015300 -
Lac2g0162 953 Pfam Auxin response factor 275 358 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac2g0162 953 ProSiteProfiles PB1 domain profile. 839 923 IPR053793 -
Lac2g0162 953 Gene3D - 836 928 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1118 Lac-Chr10:9250018 Lac2g0162 Lac-Chr2:1232499 5.50E-167 dispersed
Lac2g0162 Lac-Chr2:1232499 Lac6g3115 Lac-Chr6:48549666 4.20E-173 dispersed
Lac2g0162 Lac-Chr2:1232499 Lac1g3550 Lac-Chr1:54711541 4.60E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23421 PF02362 B3 8.20E-21 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0162 K14486 - csv:101216825 1799.64