Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0177 ATGACGGGGTTGTTCTATTTAGGTGGGAAACAAGAGGAAGATCAAGAAGAAAGAGGAAGAGAACAGCAATTGTTTTTATACAGTAGAAACAACGAAGAGATCTACTCCAAGGGGTTGGAGATATGGCCACAGTATGCCCAGAATCATCATCATCATCATCAGCAGCAGCAGCAGCAAAATATGGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAGGAGGAGCTTGATGATGAACGGCTCTGATCATGAGTTTGTTTCGAGATCAGGGTTTACTATGATGAGACAAGGAGCTGGAGCTGGAGTAGGAGGGGGAGGGATGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGACTGTTCCCATTTGAGGTGTAGGACTTGTTGCAAGAGTCGAGGGTTTCAGTGTCAAACCCATGTCAAAAGTACTTGGGTTCCCGCTGCCAAGCGTCGCGAACGCCAGCAACATCGTCAACAAATCGTCCAGCATCACCATCAACAACAACTCCGAGCAGATCAATCATCGGATCAGACTACACCCAAACGACATAGAGAAAATCAGCCATCTGTTGCTCCTGCTGCTACTTCAGGGTTAGAACTTGCACATTTTCCAGCTGAGTTCAATTCCCCAGCTGTTTTCCGGTGCGTCAAAGTCAGTGCCTTTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGCCATATGTTCAAAGGCATTCTCTACGACCAAGGTCCCGAAAGCAGCACCGGCGGCGAGAGCTCGTATTGCCACGGCGGAGATGACGGCGGGCAAGGCCTGGATCTGGTGATCGGAGCATCCAACGGCGGCGGGAGAGTTAACCAATCAGCCCCATTTGTGGAGTCTTCATTGTATCCCATCACAATCAACACATTCACCACCGGTACGCAATTTTTCCCTCCCTCACGAACATAA 948 47.89 MTGLFYLGGKQEEDQEERGREQQLFLYSRNNEEIYSKGLEIWPQYAQNHHHHHQQQQQQNMENYISFGVGPSRRSLMMNGSDHEFVSRSGFTMMRQGAGAGVGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQHRQQIVQHHHQQQLRADQSSDQTTPKRHRENQPSVAPAATSGLELAHFPAEFNSPAVFRCVKVSAFDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSTGGESSYCHGGDDGGQGLDLVIGASNGGGRVNQSAPFVESSLYPITINTFTTGTQFFPPSRT 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1334392 1335835 + Lag0036815.1 Lac2g0177 597441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0177 315 MobiDBLite consensus disorder prediction 1 21 - -
Lac2g0177 315 MobiDBLite consensus disorder prediction 149 192 - -
Lac2g0177 315 Pfam Domain of unknown function (DUF702) 106 251 - -
Lac2g0177 315 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Lac2g0177 315 MobiDBLite consensus disorder prediction 161 175 - -
Lac2g0177 315 NCBIfam LRP1 C-terminal domain 202 250 IPR006511 -
Lac2g0177 315 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 309 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0177 Lac-Chr2:1334392 Lac9g2786 Lac-Chr9:45974644 3.40E-31 dispersed
Lac1g2972 Lac-Chr1:50470992 Lac2g0177 Lac-Chr2:1334392 3.70E-52 wgd
Lac2g0177 Lac-Chr2:1334392 Lac5g2081 Lac-Chr5:39421541 8.70E-43 wgd
Lac2g0177 Lac-Chr2:1334392 Lac6g0467 Lac-Chr6:3845594 6.40E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23424 PF05142 DUF702 4.70E-64 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0177 K27807 - csv:101220654 410.994