Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0223 ATGGTTGATTTGGAAAATTCTTCGCCGGTTGCGGTTTCTGGAGATGCTGGTTTGTCTCCTTCAGGTTATATTGAACCAGTGACGGTGGTGGCTCCGCCAAAGAAGAAGCGGAATCTACCTGGAATGCCAGATCCGGCGGCGGAGGTGATTGCTTTGTCGCCGGATAGTTTACTGGCGACGAACAGGTTCGTGTGCGAGATTTGCAACAAAGGTTTCCAGCGGGACCAGAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCGTGGAAGCTCCGACAGCGGACCAGCAATGAGGTGCGTAAGCGCGTCTATGTCTGCCCGGAGCCTTCCTGCGTCCACCACAATCCAGCGAGAGCGCTCGGCGATCTCACCGGAATAAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGAGAGATGCTCGAAGAAATACGCCGTACAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACTCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGCTTTATTACACATCGAGCCTTTTGCGATGTGTTGGCGGAGGAAAGTTCTCGTGCTCAAACCCTAGCAGTTCCGAACTCTGAAGGAAAGGAATCCGCCACTACGAAAGCCGCCGTGGCTTCGCCTCCTCCGCCGCCGCTAACTCCGTCGACCACGGTGGTTTCTCCGGCGTTGTCCATTCACAGCTCAGAGTTAGCTGATAATCCGATAAGACTTCCATCTGTATCAACGCCTGCAGCCGCTACATGCTTGACCTCTGCGGCTGCCAATAGTACCACAAATGCAAGCGCTAATGTCAGTAGCTCGAACGATTTGTTTGGAAATAATACTGTTTTTGCCCCTTCTGCATCAATCTCAGCGACAACCCAAATTTCCCCAACATTAGCACCGCCCAGTTTACCCACCTCAATAGTTCCCTACGATTGCCCCTCTACTCGCCCTTCTGTTTCCACCGTTAATCCCACATCGCTTTCACTCTCTACATCTCTCTATCTTTCCACTAAAGGATCCTCCCTCTTTGCCCCACCTGACCAAGACCGTCTGCAGTACACGTGGTCCACTCAACCGGCGGCCATGTCCGCCACCGCCTTGCTGCAAAAGGCAGCGGAAATGGGTGCAACGGCGTCTAATCCGTCGTTGTTCCGAGGCTTTGGGATGGCTACTACTTCTTCTGGTCAAGATAGCTCCGCCACTGCTCAATGGACTAGGAATCTAAACCGAGATCACCGGAATGGGGATTCGTTAACGGCTGGTTTAGAGCTTGAACTTCCCTCCGGACCGGCCGGTTCTGGTTTGATGATGGCGGGTGGTCCATTTTGCTCGTATGGAAGTCAGCCCATGACGAGGGATCTTCTTGGCCTTGGCTTGGGCGGCGGTGGGGCCTCAGCAAGTAGATTTTCGGCTTTGATCGCTTCCATGGGTGGTGGGTCTGGTTACGACGTTGCAGCTTCAGTTGCCTGCGGCGGAAGTGGTGGCGGGAGTGGCGACGGAGGCTCCTCCGGCGACACTTGGGATCGAGATGAACAAGAGGGAAAACATTGA 1575 53.59 MVDLENSSPVAVSGDAGLSPSGYIEPVTVVAPPKKKRNLPGMPDPAAEVIALSPDSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESSRAQTLAVPNSEGKESATTKAAVASPPPPPLTPSTTVVSPALSIHSSELADNPIRLPSVSTPAAATCLTSAAANSTTNASANVSSSNDLFGNNTVFAPSASISATTQISPTLAPPSLPTSIVPYDCPSTRPSVSTVNPTSLSLSTSLYLSTKGSSLFAPPDQDRLQYTWSTQPAAMSATALLQKAAEMGATASNPSLFRGFGMATTSSGQDSSATAQWTRNLNRDHRNGDSLTAGLELELPSGPAGSGLMMAGGPFCSYGSQPMTRDLLGLGLGGGGASASRFSALIASMGGGSGYDVAASVACGGSGGGSGDGGSSGDTWDRDEQEGKH 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1709421 1711807 + Lag0036861.1 Lac2g0223 597487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0223 524 Gene3D Classic Zinc Finger 63 105 - -
Lac2g0223 524 MobiDBLite consensus disorder prediction 198 230 - -
Lac2g0223 524 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 204 - -
Lac2g0223 524 MobiDBLite consensus disorder prediction 501 524 - -
Lac2g0223 524 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lac2g0223 524 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Lac2g0223 524 FunFam protein indeterminate-domain 12-like 42 110 - -
Lac2g0223 524 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 138 162 - -
Lac2g0223 524 MobiDBLite consensus disorder prediction 198 212 - -
Lac2g0223 524 Pfam Zinc-finger of C2H2 type 63 85 IPR013087 -
Lac2g0223 524 Gene3D Classic Zinc Finger 118 197 - -
Lac2g0223 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Lac2g0223 524 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Lac2g0223 524 SMART c2h2final6 139 159 IPR013087 -
Lac2g0223 524 SMART c2h2final6 63 85 IPR013087 -
Lac2g0223 524 SMART c2h2final6 104 134 IPR013087 -
Lac2g0223 524 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Lac2g0223 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 467 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2895 Lac-Chr1:49859721 Lac2g0223 Lac-Chr2:1709421 2.00E-113 dispersed
Lac2g0223 Lac-Chr2:1709421 Lac9g2004 Lac-Chr9:39675566 4.00E-85 dispersed
Lac5g2055 Lac-Chr5:39018502 Lac2g0223 Lac-Chr2:1709421 8.60E-89 transposed
Lac1g2894 Lac-Chr1:49846427 Lac2g0223 Lac-Chr2:1709421 1.00E-66 wgd
Lac2g0223 Lac-Chr2:1709421 Lac6g0394 Lac-Chr6:3228385 5.00E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23428 PF12874 zf-met 0.0038 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0223 K25869 - mdm:114826446 506.523