Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0269 ATGAAGGGTTTGGGGTGTTGTTTGTTCGTCTCTCTTCTTCTTCTATCTTTCTTTACATTTTTCTCTTCGGCCCTTTCCGATGTCGAAGCTTCTTTCATTGCCCGCCGCCAACTTTTAACCCTTCATAAGAACGATGATTTGCCCGACGATTATGAGTCCACAATCCAGGTCAACGAGATCTTCCCCAATCCCCGCCTCCGACGAGCTTTCATCGCCCTTCAAGCTTGGAAGAAGGCCATTTATTCCGACCCTTTTAACACCACCGCCAATTGGGTCGGTGCCGACGTATGCTCCTACACTGGAGTTTTCTGCGCCCCTGCTCTCGACGACAACAAAATCGAAGTCGTCGCCGGAATCGACCTCAACCATGCCGACATCGCCGGTTACCTGCCCGTCGAGCTCGGTTTGCTGACCGACATTGCGTTGTTTCACATCAACACCAATCGATTCTGTGGCATTGTCCCCTCGAGCTTCTCGAGGATGATTCTGCTTCACGAACTCGACATCAGCAACAACCGATTCGTTGGTTATTTCCCGGAAGTTGTTGTGAGGATTCCAAATTTGAAATATCTCGACATAAGATACAATGAATTTGAAGGCGAATTGCCTCCTGCACTTTTCACCAAGGAATTGGATGTAATTTTAATCAACAACAATCGATTCACCTCCTGCATTCCAGAGAATTTTGGGGACTCACCGGCGGCGATAATTGTGATCGCCAACAACAATTTCACTGGTTGCATTCCGAAAAGTATTGGAAAAATGGGGAACACGTTGAACCAGTTTGTAATGTTGAACAATGAATTGGCGGGTTGTTTGCCTGCTGAGATTGGACTGCTTGGAAATGCAACGGTTATTGATGTTTCGTCGAATAAATTGAGTGGGATCTTGCCGACGAGCTTTGATGGGTTGAAGAATGTCGAGATTTTGAATATTTCTTCGAATTTTTTGACCGGGGTTGTACCGGAGGGAGTGTGTAATTTGCCCAAATTGGGTAATTTCACATTCTCTTTCAATTACTTCAATGGCGAGGCGGATAGATGCATGCCGCAGAAGAGAACAGATATTTTGTTGGATGATGCCGAGAATTGTTTACCGGAGAGGCCCATGCAGAAGGCAGCCGACACTTGTGGTCCAGTGATTAGCAAGAAAGTTGATTGCAAAGTTGATTGCAGTAAGGATAAGTGCAGCGGAGGACCGTCACTAGCACCGAAGCCTCAAACCCCACCTTCCGCTGATGATTCTCCGCCAGCGGTCCACTCTCCACCACCACAAGTTTCATCACCCCCAACACCGGTTCACTCTCCACCACCAGTGGTTCACTCTCCACCACCGTCAGTTTCATCACCCCCACCACTGGTTCACTCTCCACCACCGCCGGTTTCATCACCCCCACCACCGGTTCACTCTCCCCCACCACCGTCGATTTCATCACCCCCACCACCGATTCACTCTCCCCCACCACTGTCGATTTCATCACCCCCACCACCCGTTCACTCTCCACCACCACCACCAGTTTTCTCACCCCCACCACAGGTTTACTCTCCACCACCACCACCAGTGCACTCACCTCCACCTCCAATCCAATCTCCTCCACCCCCGGTATTCTCTCCACCACCACCACCACCAGTCTACTCACCCCCACCACCCGTGCACTCACCTCCACCTCCAATCCAATCTCCTCCACCCCCGGTATTCTCTCCACCGCCACCTTCTCCATTACCATCTCCTCCTCCTCCAGTTGCCTCTCCACCACCTCCACTAGAAGACATCATCCTTCCACCAAACTTGGGCTTCCAATACTCATCACCGCCTCCACCAATGTTTCAGGGCTACTAA 1839 50.35 MKGLGCCLFVSLLLLSFFTFFSSALSDVEASFIARRQLLTLHKNDDLPDDYESTIQVNEIFPNPRLRRAFIALQAWKKAIYSDPFNTTANWVGADVCSYTGVFCAPALDDNKIEVVAGIDLNHADIAGYLPVELGLLTDIALFHINTNRFCGIVPSSFSRMILLHELDISNNRFVGYFPEVVVRIPNLKYLDIRYNEFEGELPPALFTKELDVILINNNRFTSCIPENFGDSPAAIIVIANNNFTGCIPKSIGKMGNTLNQFVMLNNELAGCLPAEIGLLGNATVIDVSSNKLSGILPTSFDGLKNVEILNISSNFLTGVVPEGVCNLPKLGNFTFSFNYFNGEADRCMPQKRTDILLDDAENCLPERPMQKAADTCGPVISKKVDCKVDCSKDKCSGGPSLAPKPQTPPSADDSPPAVHSPPPQVSSPPTPVHSPPPVVHSPPPSVSSPPPLVHSPPPPVSSPPPPVHSPPPPSISSPPPPIHSPPPLSISSPPPPVHSPPPPPVFSPPPQVYSPPPPPVHSPPPPIQSPPPPVFSPPPPPPVYSPPPPVHSPPPPIQSPPPPVFSPPPPSPLPSPPPPVASPPPPLEDIILPPNLGFQYSSPPPPMFQGY 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2033572 2035410 + Lag0036907.1 Lac2g0269 597533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0269 612 Pfam Leucine rich repeat 284 339 IPR001611 GO:0005515(InterPro)
Lac2g0269 612 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515(InterPro)
Lac2g0269 612 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 535 IPR051582 -
Lac2g0269 612 MobiDBLite consensus disorder prediction 395 612 - -
Lac2g0269 612 PRINTS Proline rich extensin signature 422 438 - -
Lac2g0269 612 PRINTS Proline rich extensin signature 408 420 - -
Lac2g0269 612 PRINTS Proline rich extensin signature 448 460 - -
Lac2g0269 612 PRINTS Proline rich extensin signature 460 481 - -
Lac2g0269 612 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Lac2g0269 612 MobiDBLite consensus disorder prediction 403 592 - -
Lac2g0269 612 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Lac2g0269 612 SUPERFAMILY L domain-like 71 344 - -
Lac2g0269 612 Gene3D Ribonuclease Inhibitor 70 367 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0269 Lac-Chr2:2033572 Lac3g0886 Lac-Chr3:7152776 1.70E-47 dispersed
Lac2g0269 Lac-Chr2:2033572 Lac2g0271 Lac-Chr2:2041419 3.00E-07 proximal
Lac12g1666 Lac-Chr12:32195417 Lac2g0269 Lac-Chr2:2033572 4.50E-48 transposed
Lac4g0561 Lac-Chr4:12624701 Lac2g0269 Lac-Chr2:2033572 1.60E-06 transposed
Lac10g2515 Lac-Chr10:39032431 Lac2g0269 Lac-Chr2:2033572 9.00E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0269 - - - 0.0