Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0328 ATGGAAAATGATCATCTCAAATCGGAGGATCAGATGGAGATTATCATGATGATGCAACAGATGGACAAAATCCCAGAATTTTGCGGTGGTTACAATGATCTCTCACCGCCGTCTGATTTCAGCTCAAGCAGCAACATCAGCACCTCCGACCCACATTGCCTAGAAAATCTTCAACAAGCCGCAGAGTCATCGCCTCCATTCATGAACCTACCTTTGCCTCCAACTGTTGAACAACACTCGGTTTTTTCGGGAACAGCTCCATTCCCCACCGCTTCACGGTGGCGAAATTCAGTGGTTTCCGGTGGTGAAACGGACTCGCAGAAGCAGAGGTCGGTGGCGGCTATGAGAGAGATGATATTCCGAATGGCAGTGATGCAACCAATTCACATAGACCCAGAATCGGTGAAGCCACCAAAAAGGAGGAACGTGAAGATTTCAACAGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAGAGAATAAGTGAGAGAATTAGGATACTTCAAAGACTGGTTCCTGGAGGTACGAAAATGGATACAGCTTCGATGTTGGACGAGGCTATACATTACGTTAAATTCTTAAAGACCCAGGTGCAATCACTCGAAAGAGCAGCCGCTAACAGGCCAATCAGTGGTGCAGCTGCTGGCGTAGGGTTTCCTTTGGAAATGTCGAGTGGGAGCTATGTTCCCATGGAAAAACCTTCCCCAATGCCTCACAACGTCCAGCAATTCGGAGATGCTTAA 744 48.12 MENDHLKSEDQMEIIMMMQQMDKIPEFCGGYNDLSPPSDFSSSSNISTSDPHCLENLQQAAESSPPFMNLPLPPTVEQHSVFSGTAPFPTASRWRNSVVSGGETDSQKQRSVAAMREMIFRMAVMQPIHIDPESVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPISGAAAGVGFPLEMSSGSYVPMEKPSPMPHNVQQFGDA 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2450276 2451019 - Lag0036966.1 Lac2g0328 597592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0328 247 SMART finulus 151 200 IPR011598 GO:0046983(InterPro)
Lac2g0328 247 MobiDBLite consensus disorder prediction 35 51 - -
Lac2g0328 247 MobiDBLite consensus disorder prediction 132 157 - -
Lac2g0328 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983(InterPro)
Lac2g0328 247 FunFam BHLH transcription factor 148 211 - -
Lac2g0328 247 Gene3D - 148 210 IPR036638 GO:0046983(InterPro)
Lac2g0328 247 Pfam Helix-loop-helix DNA-binding domain 154 195 IPR011598 GO:0046983(InterPro)
Lac2g0328 247 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 42 241 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0328 247 MobiDBLite consensus disorder prediction 32 51 - -
Lac2g0328 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 203 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0328 Lac-Chr2:2450276 Lac9g0990 Lac-Chr9:22954940 1.00E-38 dispersed
Lac1g1844 Lac-Chr1:40116391 Lac2g0328 Lac-Chr2:2450276 2.80E-21 transposed
Lac1g2390 Lac-Chr1:45228306 Lac2g0328 Lac-Chr2:2450276 4.20E-35 transposed
Lac1g2580 Lac-Chr1:47142379 Lac2g0328 Lac-Chr2:2450276 2.80E-06 wgd
Lac2g0328 Lac-Chr2:2450276 Lac6g0294 Lac-Chr6:2407016 1.20E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23432 PF00010 HLH 1.70E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0328 - - - 0.0