Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0341 ATGGAAGGAGAAGTTTGCTCGGCTGTAAGTTCATCGCCAACCGGGTCAGAGAAGAGGAAGCAAAGGCATCAGAGTCATCATCTTCAGCAAGAAAAGCCTTACAGAGGAATACGGATGAGGAAGTGGGGGAAGTGGGTTGCTGAAATCAGAGAACCCAACAAGCGCTCCAGGATTTGGCTTGGTTCTTACACAACTCCGGTGGCCGCCGCCAGGGCTTACGACACCGCGGTTTTCTACCTCCGAGGCCCCACCGCCCGCCTGAACTTCCCGGATTTGGTGTTCGAAGAGGACCAGCTTCACGACATGTCGGCTGCCTCCATACGCAAAAGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAGACCTCGCTCCACGCCTCTAACTCCAACTCTCAAATTTCCGAGAAGCCTGATTTGAACGAGTATCCCAACCCCGAAAGCTCAGACGACGATTAA 459 54.47 MEGEVCSAVSSSPTGSEKRKQRHQSHHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPDLVFEEDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSNSQISEKPDLNEYPNPESSDDD 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2553917 2554375 - Lag0036979.1 Lac2g0341 597605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0341 152 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0341 152 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0341 152 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0341 152 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
Lac2g0341 152 MobiDBLite consensus disorder prediction 123 152 - -
Lac2g0341 152 MobiDBLite consensus disorder prediction 1 32 - -
Lac2g0341 152 CDD AP2 34 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0341 152 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0341 152 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0341 152 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0341 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 151 - -
Lac2g0341 152 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Lac2g0341 152 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0341 Lac-Chr2:2553917 Lac9g1143 Lac-Chr9:26787981 4.10E-38 dispersed
Lac1g2587 Lac-Chr1:47233767 Lac2g0341 Lac-Chr2:2553917 9.50E-39 wgd
Lac2g0341 Lac-Chr2:2553917 Lac6g0284 Lac-Chr6:2305823 2.50E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23435 PF00847 AP2 2.30E-11 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0341 K09286 - csv:101219005 272.707