Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0348 ATGCTCCTTCTTGACAATAATATGGCTGTGGAGCTTATGGTGGGTTTTGGGGATGCTGCTACTAATTTCACGCCCAAGATGGAGGAAAATGCCGCTGTCTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCGAGAATTTCCTCCGATTGATGTCTCATACTCCTAATCAACATCACTCCGAACACCATTCTTCCACTTCCACTGCTCCCAATGCTACTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAGAAGGTCATTTCTTTGCTCGACCGGAACAGAACCGGCCATGCCCGCTTCAGAAGGGCTCCCGTTGTTACTACTACTTCCCCTCCGCCGCCGCCGCCTCCGCCCAAGGTCAAGCCGCAGCACCAAGATCCGAGTTCTTCGTCTCCGATTTCGACCCCGCAGATTCAAGTAAAGAAACAGGAATCAGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCTTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAATCCCCATCAGCCTTCTAATCCGCCAAATACCTTCCAAGCCCAGCAAAATTCTTCGTCGGTGGTCCTAAAAAATGGGTCTGCAGATAGAAAAGATTCGACTACCACCATCAATTTCGCAGCCTCGCCCCCGATTTCCGCTGCAAATTCGTATATTTCATCGTTAACCGGAGACACCGAAAGCTTACAGCCATCTCTGTCATCTGGATTTCAGTTCACCCACATGTCCCAGGTCTCATCCGTCGGAAAGCCCCCTCTTTCATCCTCCTCGCTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCATGAAGTGCGGCTCGTCGTCCGGCCGGTGTCACTGCTCCAAGAAGAGGAAAAACAGGATAAAGAGAGTCATCAGAGTTCCCGCCGTCAGTTCGAAACTTGCCGATATCCCACCGGACGATTATTCATGGAGAAAGTACGGCCAGAAACCCATCAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTCTGAGAGGGTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTGGAATCATCATAG 1164 50.69 MLLLDNNMAVELMVGFGDAATNFTPKMEENAAVSAVQEAASAGIQSVENFLRLMSHTPNQHHSEHHSSTSTAPNATAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVVTTTSPPPPPPPPKVKPQHQDPSSSSPISTPQIQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSNPPNTFQAQQNSSSVVLKNGSADRKDSTTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSVGKPPLSSSSLKRKCNSMDDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2618629 2620196 - Lag0036986.1 Lac2g0348 597612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0348 387 MobiDBLite consensus disorder prediction 167 212 - -
Lac2g0348 387 SUPERFAMILY WRKY DNA-binding domain 312 373 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0348 387 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 34 376 IPR044810 GO:0003700(InterPro)
Lac2g0348 387 Gene3D WRKY domain 300 375 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0348 387 MobiDBLite consensus disorder prediction 181 212 - -
Lac2g0348 387 Pfam Plant zinc cluster domain 267 312 IPR018872 -
Lac2g0348 387 ProSiteProfiles WRKY domain profile. 309 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0348 387 MobiDBLite consensus disorder prediction 105 148 - -
Lac2g0348 387 MobiDBLite consensus disorder prediction 131 148 - -
Lac2g0348 387 MobiDBLite consensus disorder prediction 114 130 - -
Lac2g0348 387 FunFam WRKY transcription factor 65 298 375 - -
Lac2g0348 387 SMART WRKY_cls 314 374 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0348 387 Pfam WRKY DNA -binding domain 316 372 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2645 Lac-Chr11:42453274 Lac2g0348 Lac-Chr2:2618629 4.80E-47 dispersed
Lac2g0348 Lac-Chr2:2618629 Lac9g1320 Lac-Chr9:30464887 2.10E-67 dispersed
Lac2g0685 Lac-Chr2:5150702 Lac2g0348 Lac-Chr2:2618629 2.30E-57 transposed
Lac3g0363 Lac-Chr3:2742618 Lac2g0348 Lac-Chr2:2618629 3.30E-52 transposed
Lac1g2593 Lac-Chr1:47293777 Lac2g0348 Lac-Chr2:2618629 4.40E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23437 PF03106 WRKY 4.00E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0348 - - - 0.0