Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0348 | ATGCTCCTTCTTGACAATAATATGGCTGTGGAGCTTATGGTGGGTTTTGGGGATGCTGCTACTAATTTCACGCCCAAGATGGAGGAAAATGCCGCTGTCTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCGAGAATTTCCTCCGATTGATGTCTCATACTCCTAATCAACATCACTCCGAACACCATTCTTCCACTTCCACTGCTCCCAATGCTACTGCTGGATACGAAGCCGTCGCCGATTCCGTCGTCAACAAATTCAAGAAGGTCATTTCTTTGCTCGACCGGAACAGAACCGGCCATGCCCGCTTCAGAAGGGCTCCCGTTGTTACTACTACTTCCCCTCCGCCGCCGCCGCCTCCGCCCAAGGTCAAGCCGCAGCACCAAGATCCGAGTTCTTCGTCTCCGATTTCGACCCCGCAGATTCAAGTAAAGAAACAGGAATCAGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCTTCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAATCCCCATCAGCCTTCTAATCCGCCAAATACCTTCCAAGCCCAGCAAAATTCTTCGTCGGTGGTCCTAAAAAATGGGTCTGCAGATAGAAAAGATTCGACTACCACCATCAATTTCGCAGCCTCGCCCCCGATTTCCGCTGCAAATTCGTATATTTCATCGTTAACCGGAGACACCGAAAGCTTACAGCCATCTCTGTCATCTGGATTTCAGTTCACCCACATGTCCCAGGTCTCATCCGTCGGAAAGCCCCCTCTTTCATCCTCCTCGCTAAAGAGAAAATGCAATTCCATGGACGATTCCGCCATGAAGTGCGGCTCGTCGTCCGGCCGGTGTCACTGCTCCAAGAAGAGGAAAAACAGGATAAAGAGAGTCATCAGAGTTCCCGCCGTCAGTTCGAAACTTGCCGATATCCCACCGGACGATTATTCATGGAGAAAGTACGGCCAGAAACCCATCAAAGGCTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTCTGAGAGGGTGCCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAGCGCTTGTTCTGGAATCATCATAG | 1164 | 50.69 | MLLLDNNMAVELMVGFGDAATNFTPKMEENAAVSAVQEAASAGIQSVENFLRLMSHTPNQHHSEHHSSTSTAPNATAGYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPVVTTTSPPPPPPPPKVKPQHQDPSSSSPISTPQIQVKKQESVSAFKVYCPTPSSVVRLPPLPHNNPHQPSNPPNTFQAQQNSSSVVLKNGSADRKDSTTTINFAASPPISAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSVGKPPLSSSSLKRKCNSMDDSAMKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPAALVLESS | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2618629 | 2620196 | - | Lag0036986.1 | Lac2g0348 | 597612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0348 | 387 | MobiDBLite | consensus disorder prediction | 167 | 212 | - | - | |
Lac2g0348 | 387 | SUPERFAMILY | WRKY DNA-binding domain | 312 | 373 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac2g0348 | 387 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 34 | 376 | IPR044810 | GO:0003700(InterPro) | |
Lac2g0348 | 387 | Gene3D | WRKY domain | 300 | 375 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac2g0348 | 387 | MobiDBLite | consensus disorder prediction | 181 | 212 | - | - | |
Lac2g0348 | 387 | Pfam | Plant zinc cluster domain | 267 | 312 | IPR018872 | - | |
Lac2g0348 | 387 | ProSiteProfiles | WRKY domain profile. | 309 | 375 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac2g0348 | 387 | MobiDBLite | consensus disorder prediction | 105 | 148 | - | - | |
Lac2g0348 | 387 | MobiDBLite | consensus disorder prediction | 131 | 148 | - | - | |
Lac2g0348 | 387 | MobiDBLite | consensus disorder prediction | 114 | 130 | - | - | |
Lac2g0348 | 387 | FunFam | WRKY transcription factor 65 | 298 | 375 | - | - | |
Lac2g0348 | 387 | SMART | WRKY_cls | 314 | 374 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac2g0348 | 387 | Pfam | WRKY DNA -binding domain | 316 | 372 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2645 | Lac-Chr11:42453274 | Lac2g0348 | Lac-Chr2:2618629 | 4.80E-47 | dispersed | |
Lac2g0348 | Lac-Chr2:2618629 | Lac9g1320 | Lac-Chr9:30464887 | 2.10E-67 | dispersed | |
Lac2g0685 | Lac-Chr2:5150702 | Lac2g0348 | Lac-Chr2:2618629 | 2.30E-57 | transposed | |
Lac3g0363 | Lac-Chr3:2742618 | Lac2g0348 | Lac-Chr2:2618629 | 3.30E-52 | transposed | |
Lac1g2593 | Lac-Chr1:47293777 | Lac2g0348 | Lac-Chr2:2618629 | 4.40E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23437 | PF03106 | WRKY | 4.00E-25 | CL0274 | Lac | TF |
Pathway information
