Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0387 | ATGGATTCTTTTGGAGGGTTCAGTACTGAAGGGGAATGGGATCTGTGCGGCTCAATTTTATCATTGGAAGAGCTTGATTTTACGCCAATTCCCGAGGCCACGGCGGGGCTTGCCGATGCTTGGTTTTGTTCTTTGGATTCTTTCACTGCCAATTTGAATTCTTGTGTTTTTGGAGCTAATTGGAGAGAAGAAAATAACGATAATAATGGTGTTGATCAATTTGCTTGTGTTGGTGCTGCTGATTATCATATGTCGATGTCTGGTGGTGCGATTGAAGAGACGAAGATGGAGTCTGTTTTCTCGGCTTGTAATGACATTTTGCTGCAAGAGATCAATGGATTTTGCGGTGAAGATAGATTTTCAAACGTTGATGTTGAAACCCATCAAGGAGATAATGCTAGCAATCCTGCAAATGTATTGCACCACAAAAGGAAATCCATTGTTGTCGCTGGTGATGATGATCTTGATCACAACAAGCTCAACAACGACCCCAATAAGAGAATTCGTACTTCAAACAATAAAACTAGGAAGGGCACACAGTCAAATGGTAAGACCAACCAGAAATTGAGCACTCGGCGGCGCAAATGTGAAGAAGAACAGGAAATTAATGGAGGGTCTGATATGAACAGTTGCAGCAGCGATAACTCATCAGAGACGGATGACAATGCTTCACAAGATACTAATGGAGCCACAGTTTTAGAAGCCGACGCCTCCCCTGCAAAAGGCAAGACCAGAGCCTCCAGAGGCTCAGCAACTGATCCACAGAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGCCTCAGAATTCTGCAGAAACTAGTCCCAAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGACTTGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA | 1005 | 43.08 | MDSFGGFSTEGEWDLCGSILSLEELDFTPIPEATAGLADAWFCSLDSFTANLNSCVFGANWREENNDNNGVDQFACVGAADYHMSMSGGAIEETKMESVFSACNDILLQEINGFCGEDRFSNVDVETHQGDNASNPANVLHHKRKSIVVAGDDDLDHNKLNNDPNKRIRTSNNKTRKGTQSNGKTNQKLSTRRRKCEEEQEINGGSDMNSCSSDNSSETDDNASQDTNGATVLEADASPAKGKTRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLQQKLSSFL | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2845294 | 2846933 | + | Lag0037025.1 | Lac2g0387 | 597651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0387 | 334 | SMART | finulus | 256 | 305 | IPR011598 | GO:0046983(InterPro) | |
Lac2g0387 | 334 | MobiDBLite | consensus disorder prediction | 203 | 232 | - | - | |
Lac2g0387 | 334 | MobiDBLite | consensus disorder prediction | 150 | 164 | - | - | |
Lac2g0387 | 334 | Pfam | Helix-loop-helix DNA-binding domain | 260 | 300 | IPR011598 | GO:0046983(InterPro) | |
Lac2g0387 | 334 | Gene3D | - | 252 | 308 | IPR036638 | GO:0046983(InterPro) | |
Lac2g0387 | 334 | MobiDBLite | consensus disorder prediction | 150 | 257 | - | - | |
Lac2g0387 | 334 | FunFam | Basic helix-loop-helix transcription factor | 251 | 308 | - | - | |
Lac2g0387 | 334 | CDD | bHLH_AtIND_like | 251 | 313 | - | - | |
Lac2g0387 | 334 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 250 | 316 | IPR036638 | GO:0046983(InterPro) | |
Lac2g0387 | 334 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 250 | 299 | IPR011598 | GO:0046983(InterPro) | |
Lac2g0387 | 334 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 122 | 310 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0387 | Lac-Chr2:2845294 | Lac8g1945 | Lac-Chr8:37821383 | 3.20E-19 | dispersed | |
Lac12g0175 | Lac-Chr12:1962102 | Lac2g0387 | Lac-Chr2:2845294 | 1.90E-37 | wgd | |
Lac2g0387 | Lac-Chr2:2845294 | Lac5g2599 | Lac-Chr5:44432947 | 6.60E-41 | wgd | |
Lac2g0387 | Lac-Chr2:2845294 | Lac6g0225 | Lac-Chr6:1793054 | 1.40E-06 | wgd | |
Lac2g0387 | Lac-Chr2:2845294 | Lac6g0252 | Lac-Chr6:2037952 | 2.40E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23442 | PF00010 | HLH | 1.00E-08 | No_clan | Lac | TF |
Pathway information
