Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0387 ATGGATTCTTTTGGAGGGTTCAGTACTGAAGGGGAATGGGATCTGTGCGGCTCAATTTTATCATTGGAAGAGCTTGATTTTACGCCAATTCCCGAGGCCACGGCGGGGCTTGCCGATGCTTGGTTTTGTTCTTTGGATTCTTTCACTGCCAATTTGAATTCTTGTGTTTTTGGAGCTAATTGGAGAGAAGAAAATAACGATAATAATGGTGTTGATCAATTTGCTTGTGTTGGTGCTGCTGATTATCATATGTCGATGTCTGGTGGTGCGATTGAAGAGACGAAGATGGAGTCTGTTTTCTCGGCTTGTAATGACATTTTGCTGCAAGAGATCAATGGATTTTGCGGTGAAGATAGATTTTCAAACGTTGATGTTGAAACCCATCAAGGAGATAATGCTAGCAATCCTGCAAATGTATTGCACCACAAAAGGAAATCCATTGTTGTCGCTGGTGATGATGATCTTGATCACAACAAGCTCAACAACGACCCCAATAAGAGAATTCGTACTTCAAACAATAAAACTAGGAAGGGCACACAGTCAAATGGTAAGACCAACCAGAAATTGAGCACTCGGCGGCGCAAATGTGAAGAAGAACAGGAAATTAATGGAGGGTCTGATATGAACAGTTGCAGCAGCGATAACTCATCAGAGACGGATGACAATGCTTCACAAGATACTAATGGAGCCACAGTTTTAGAAGCCGACGCCTCCCCTGCAAAAGGCAAGACCAGAGCCTCCAGAGGCTCAGCAACTGATCCACAGAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAGCGCCTCAGAATTCTGCAGAAACTAGTCCCAAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTGAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGACTTGTGGATGTATGCTCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA 1005 43.08 MDSFGGFSTEGEWDLCGSILSLEELDFTPIPEATAGLADAWFCSLDSFTANLNSCVFGANWREENNDNNGVDQFACVGAADYHMSMSGGAIEETKMESVFSACNDILLQEINGFCGEDRFSNVDVETHQGDNASNPANVLHHKRKSIVVAGDDDLDHNKLNNDPNKRIRTSNNKTRKGTQSNGKTNQKLSTRRRKCEEEQEINGGSDMNSCSSDNSSETDDNASQDTNGATVLEADASPAKGKTRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLQQKLSSFL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2845294 2846933 + Lag0037025.1 Lac2g0387 597651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0387 334 SMART finulus 256 305 IPR011598 GO:0046983(InterPro)
Lac2g0387 334 MobiDBLite consensus disorder prediction 203 232 - -
Lac2g0387 334 MobiDBLite consensus disorder prediction 150 164 - -
Lac2g0387 334 Pfam Helix-loop-helix DNA-binding domain 260 300 IPR011598 GO:0046983(InterPro)
Lac2g0387 334 Gene3D - 252 308 IPR036638 GO:0046983(InterPro)
Lac2g0387 334 MobiDBLite consensus disorder prediction 150 257 - -
Lac2g0387 334 FunFam Basic helix-loop-helix transcription factor 251 308 - -
Lac2g0387 334 CDD bHLH_AtIND_like 251 313 - -
Lac2g0387 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 316 IPR036638 GO:0046983(InterPro)
Lac2g0387 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 299 IPR011598 GO:0046983(InterPro)
Lac2g0387 334 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 122 310 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0387 Lac-Chr2:2845294 Lac8g1945 Lac-Chr8:37821383 3.20E-19 dispersed
Lac12g0175 Lac-Chr12:1962102 Lac2g0387 Lac-Chr2:2845294 1.90E-37 wgd
Lac2g0387 Lac-Chr2:2845294 Lac5g2599 Lac-Chr5:44432947 6.60E-41 wgd
Lac2g0387 Lac-Chr2:2845294 Lac6g0225 Lac-Chr6:1793054 1.40E-06 wgd
Lac2g0387 Lac-Chr2:2845294 Lac6g0252 Lac-Chr6:2037952 2.40E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23442 PF00010 HLH 1.00E-08 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0387 - - - 0.0