Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0394 ATGGCTTTATTCTCAGATGCTGTTGTCGGCCTTCATCATACTGGCGTTGGATATGGTGTGGTCCTTTTCGACTCCAACGGTGTTATCTGTGCAACTATGGAGGGATTTGACTGTGCGTCATATACATCGTTTGCGGCCGAAGTAAATGCGTTAATTAATGGCATTCGTCTTCTACAAAGAATGGCAATTACTCGTGCATGTGCTTTTTTGGATTCAATCAACACTACCAAGGTGATTCGTGGAGATATCAATACTACATCTGAGGTACATCATTGGATTGTTCAAATTCGGGCAATGAGCAAATCTTTTGAGAGCTTATACTTTAATTATGTTCTAAGACAAGGTAACAAGAAGGTTGATTCTTTAGCCAAGGATGCGTATATTCATAGACGATCTATGCTTTGGCTTGAGAATTTTCCTCAAGATTTGTTATTTTTACGCAATTGCGATCGATTGGTCAAAGATGATGGTTCTGGTTCAAACCAACCAATTATAAAAGAATTTGCAGAACCAGCCACCGGAGGCCATGGAGTCAAAACGAAGCTGCTGAAGAATCAGAGGTCAGAAGGTAATAGACTTGGGATGGAAAGTTATTTGAACGAACATTTCGGGGACGTGAAGCCCAAGAACTCGTCCGATGAAGCGCTTCAGAGATGGAGGCGCCTTTGCTGGTTGGTCAAGAATCGGAAACGGAGGTTTCGATTTACTGCTAATCTCTCTAAACGATTTGAGGCCGATGCTATTAGACGCTCCAATCAGGAGAAGTTTAGAGTTGCAGTTTTGGTTTCACAAGCCGCGCTTCAGTTCATCAATGGGTTGGATTTATCTCCTGATTACGTTGTGCCTGAAGAGGTCAGGCAAGCAGGTTATGAAATTTGTGCTGATGAAGCGGGCTCCATTGTTGATGGCCATGACGTGAAGAAGCTGAAGATTCATGGGGGTGCTGAGGGTATCGCAACTAAGCTTGCCACATCAACGGAGACAGGCATTCCTACTACGGACCATTTGATCAAGAAAAGACAAGAGATTTATGGAATTAACAAATTCACCGAAAGCCCATCTCGAGGATTTTGGCTCTTTGTTTGGGAAGCTCTCCAGGATACGACTTTAATGATACTCGCTTTCTGTGCTGTAGTTTCCCTTCTTGTTGGCATAGTGATGGAAGGATGGCCGAAGGGTGCTCATGATGGGCTCGGCATTGTTGCAAGTATCTTGCTTGTTGTATTTGTCACTGCTACCAGTGACTATAGACAATCGCTTCAGTTCAAGGATTTGGACAGGGAAAAGAAGAAAATTGCGGTTCAGGTTACTCGAAATGGGCTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATATTGTTCATCTTGCCATGGGTGATCAGGTACCAGCAGATGGACTTTTCGTTTCAGGGTACTCTCTTCTGATAAATGAATCTAGTTTAACAGGTGAGAGCGAACCAGTTAACGTAAATTGTCAAAACCCTTTCCTCTTGTCCGGAACAAAAGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTTGGCATGAGGACCCAGTGGGGCAAACTGATGGCCACTCTTAGTGAAGGAGGAGATGATGAGACTCCTTTGCAGGTAAAGCTAAATGGAGTGGCAACAATTATTGGAAAAATAGGTCTGTTTTTTGCTGTCATAACTTTCGCTGTATTGGTTCAAGGATTGTTCAGTCGCAAGCTACAAGAAGGGTCTTACTTCAGCTGGTCTGGAGATGAAGCAATGGAAGTTTTGGAATTCTTTGCTGTTGCCGTTACGATTGTTGTGGTTGCTGTGCCTGAAGGGCTGCCTTTGGCGGTGACACTGAGCCTTGCTTTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTGGCTGCTTGTGAGACGATGGGATCAGCTACTACTATTTGCAGCGACAAAACTGGGACATTGACGACTAACCACATGACTGTTGTGAAAGCTTGCATCTGCAGTAAGGTCAAGGAAGTTAGCAATTCAAGCAAGTGTTCTGATTATCGTTCAGAACTTCCCGACTCCGCTGTGGGTATTTTACTGCAATCGATATTTAACAACACTGGTGGAGAAATCGTCAAGAACAAAGATGGCGAAAATGAGATACTTGGGACGCCCACCGAGTCTGCTCTTCTGGAATTTGGCCTTCTGCTTGGTGGGGATTTCCAAGAAGAACGCCAAAAGTCAAAAATCGCGAGAATCGAGCCCTTCAATTCTGTTAAGAAACGAATGGGTGTTGTTTTGGAGCTCCCATCCGGTGTCTTCCGCGCACACAGCAAAGGTGCTTCAGAGATCGTTTTGGCTTCATGTGACAAAGTTCTTGACTCTAACGGTGAGGCAGTTCCTCTCAATGAAGAGTCCATCAACTTTTTGAAGGAAACCATCGAAGAATTTGCGGGCGAAGCTCTTCGAACATTGTGCCTGGCTTACATGGACATCGAGGGTGAGTATCAGTCTGAAAGTCCGATTCCCGTTAGTGGCTACACGTGCATAGGAATTGTTGGTATCAAGGATCCCGTTCGTCCGGGTGTCAAGGAGTCTGTTGCAATTTGCAAGGCCGCCGGTATAACCGTACGGATGGTTACGGGAGATAACATCACCACCGCCAAAGCAATTGCCAGGGAATGTGGAATTTTGACTGACGATGGTATAGCAATTGAAGGTCCTGAATTCCGGGAGAAGAAGGAGGAAGAGTTGAGTAAAATAGTACCAAAAATTCAGGTTATGGCTCGATCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGGACCACTTTTCAAGAAGTCGTTGCAGTGACTGGGGATGGCACAAATGATGCTCCGGCGCTCCATGAAGCAGATATTGGATTAGCTATGGGCATCGCTGGAACTGAGGTGGCAAAAGAGAGTGCCGATGTAATAATTCTCGACGACAACTTCTCTACAATTGCTACTGTTGCCAAATGGGGACGTTCAGTCTACATAAATATCCAAAAGTTTGTTCAGTTTCAGCTAACAGTGAATGTGGTTGCACTTCTCGTCAATTTTTCTTCAGCCTGTTTGACAGGAAATGCTCCCCTCACTGCTGTGCAACTGCTATGGGTCAACATGATAATGGACACACTCGGAGCACTTGCATTGGCAACCGAGCCTCCTACTGATGACTTAATGAAGAGATTGCCAGTTGGTCGGAAAGGGAATTTCATTAGCAATGTGATGTGGAGAAATATCTTAGGGCAGTCAGTATATCAGTTTGTTATAGTTTGGTATCTCCAGACAAGAGGGCAAGCTCTTTTTCATCTTGATGGCCCAGACTCTGGATTGATTCTGAATACACTGATTTTCAATGCATTCGTCTTTTGTCAGGTTTTCAATGAGATAAGCTCAAGAGACATGGAAAAGATAAACGTGTTTGAAGGAATATTGAAGAACTACGTGTTTGTGGCAGTGCTCGCTTGCACTGTCCTTTTCCAGATCATAATCATCCAATTCCTGGGAACGTTTGCAAACACATATCCTCTGAACTCCCAGCAATGGTTTGTCACCGTGTTATTTGGATTTCTTGGCATGCCAATTGCAGCAGCTTTGAAGATGATTCCGGCGCTTGGAGGCGATCCTGAGCTGAACCGAGTGGAACTGGGGCAGACCGGGACAACAGGGACCGAACGGAGGCGGAAGGAACTCGACCCACACGAAGGGTCGAGCATGGGATTGGGCCGAGACGGTCCAATCCCTTCGGCTCGCTCTCCTCCAGAGTCTGCTTCCCGATCAAGCCTTCATGTTGTGTTGCGTTGTCCTGCTTAG 3834 45.07 MALFSDAVVGLHHTGVGYGVVLFDSNGVICATMEGFDCASYTSFAAEVNALINGIRLLQRMAITRACAFLDSINTTKVIRGDINTTSEVHHWIVQIRAMSKSFESLYFNYVLRQGNKKVDSLAKDAYIHRRSMLWLENFPQDLLFLRNCDRLVKDDGSGSNQPIIKEFAEPATGGHGVKTKLLKNQRSEGNRLGMESYLNEHFGDVKPKNSSDEALQRWRRLCWLVKNRKRRFRFTANLSKRFEADAIRRSNQEKFRVAVLVSQAALQFINGLDLSPDYVVPEEVRQAGYEICADEAGSIVDGHDVKKLKIHGGAEGIATKLATSTETGIPTTDHLIKKRQEIYGINKFTESPSRGFWLFVWEALQDTTLMILAFCAVVSLLVGIVMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAVQVTRNGLRQKISIYELLPGDIVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNVNCQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFSRKLQEGSYFSWSGDEAMEVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICSKVKEVSNSSKCSDYRSELPDSAVGILLQSIFNNTGGEIVKNKDGENEILGTPTESALLEFGLLLGGDFQEERQKSKIARIEPFNSVKKRMGVVLELPSGVFRAHSKGASEIVLASCDKVLDSNGEAVPLNEESINFLKETIEEFAGEALRTLCLAYMDIEGEYQSESPIPVSGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKKEEELSKIVPKIQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSVYQFVIVWYLQTRGQALFHLDGPDSGLILNTLIFNAFVFCQVFNEISSRDMEKINVFEGILKNYVFVAVLACTVLFQIIIIQFLGTFANTYPLNSQQWFVTVLFGFLGMPIAAALKMIPALGGDPELNRVELGQTGTTGTERRRKELDPHEGSSMGLGRDGPIPSARSPPESASRSSLHVVLRCPA 1277
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 2889004 2899261 - Lag0037032.1 Lac2g0394 597658
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0394 1277 NCBIfam HAD-IC family P-type ATPase 915 1031 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0394 1277 NCBIfam HAD-IC family P-type ATPase 744 895 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0394 1277 NCBIfam HAD-IC family P-type ATPase 581 671 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0394 1277 NCBIfam HAD-IC family P-type ATPase 400 571 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0394 1277 PRINTS H+-transporting ATPase (proton pump) signature 806 824 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0394 1277 PRINTS H+-transporting ATPase (proton pump) signature 950 966 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0394 1277 PRINTS H+-transporting ATPase (proton pump) signature 982 1007 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0394 1277 FunFam Calcium-transporting ATPase 211 271 - -
Lac2g0394 1277 SMART Cation_ATPase_N_a_2 314 385 IPR004014 -
Lac2g0394 1277 FunFam Calcium-transporting ATPase 843 995 - -
Lac2g0394 1277 Pfam Cation transport ATPase (P-type) 709 788 - -
Lac2g0394 1277 Pfam E1-E2 ATPase 431 627 - -
Lac2g0394 1277 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 654 859 IPR023299 GO:0000166(InterPro)
Lac2g0394 1277 MobiDBLite consensus disorder prediction 1229 1244 - -
Lac2g0394 1277 FunFam Calcium-transporting ATPase 411 531 - -
Lac2g0394 1277 SUPERFAMILY Calcium ATPase, transduction domain A 433 528 IPR008250 -
Lac2g0394 1277 Gene3D - 336 531 - -
Lac2g0394 1277 Gene3D - 211 271 - -
Lac2g0394 1277 NCBIfam calcium-translocating P-type ATPase, PMCA-type 302 1211 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Lac2g0394 1277 Gene3D - 1 127 IPR036397 GO:0003676(InterPro)
Lac2g0394 1277 Pfam Cation transporter/ATPase, N-terminus 312 380 IPR004014 -
Lac2g0394 1277 PRINTS P-type cation-transporting ATPase superfamily signature 847 858 - -
Lac2g0394 1277 PRINTS P-type cation-transporting ATPase superfamily signature 869 879 - -
Lac2g0394 1277 PRINTS P-type cation-transporting ATPase superfamily signature 479 493 - -
Lac2g0394 1277 PRINTS P-type cation-transporting ATPase superfamily signature 974 986 - -
Lac2g0394 1277 PRINTS P-type cation-transporting ATPase superfamily signature 648 662 - -
Lac2g0394 1277 PRINTS P-type cation-transporting ATPase superfamily signature 950 969 - -
Lac2g0394 1277 Pfam Ca2+-ATPase N terminal autoinhibitory domain 199 244 IPR024750 GO:0005516(InterPro)
Lac2g0394 1277 ProSitePatterns E1-E2 ATPases phosphorylation site. 650 656 IPR018303 -
Lac2g0394 1277 SFLD Haloacid Dehalogenase 630 1002 - -
Lac2g0394 1277 SUPERFAMILY Calcium ATPase, transmembrane domain M 313 1210 IPR023298 -
Lac2g0394 1277 SUPERFAMILY HAD-like 646 1055 IPR036412 -
Lac2g0394 1277 Pfam Reverse transcriptase-like 17 126 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lac2g0394 1277 PANTHER CATION TRANSPORTING ATPASE 281 1210 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Lac2g0394 1277 SFLD p-type atpase 630 1002 IPR044492 -
Lac2g0394 1277 Gene3D - 658 854 IPR023299 GO:0000166(InterPro)
Lac2g0394 1277 FunFam Calcium-transporting ATPase 658 854 - -
Lac2g0394 1277 Pfam haloacid dehalogenase-like hydrolase 824 964 - -
Lac2g0394 1277 SUPERFAMILY Ribonuclease H-like 4 129 IPR012337 -
Lac2g0394 1277 FunFam Calcium-transporting ATPase 967 1212 - -
Lac2g0394 1277 Pfam Cation transporting ATPase, C-terminus 1035 1209 IPR006068 -
Lac2g0394 1277 CDD P-type_ATPase_Ca_PMCA-like 339 1083 - -
Lac2g0394 1277 Gene3D - 363 1209 - -
Lac2g0394 1277 Gene3D - 645 995 IPR023214 -
Lac2g0394 1277 CDD RNase_H_like 3 124 IPR044730 -
Lac2g0394 1277 MobiDBLite consensus disorder prediction 1220 1270 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0131 Lac-Chr13:935310 Lac2g0394 Lac-Chr2:2889004 2.20E-19 dispersed
Lac2g0394 Lac-Chr2:2889004 Lac7g2071 Lac-Chr7:33809960 0.00E+00 dispersed
Lac8g2265 Lac-Chr8:40876067 Lac2g0394 Lac-Chr2:2889004 2.00E-09 dispersed
Lac1g3460 Lac-Chr1:53968980 Lac2g0394 Lac-Chr2:2889004 7.70E-12 transposed
Lac2g2519 Lac-Chr2:37559061 Lac2g0394 Lac-Chr2:2889004 1.10E-20 transposed
Lac6g2235 Lac-Chr6:38981690 Lac2g0394 Lac-Chr2:2889004 1.50E-254 transposed
Lac6g2758 Lac-Chr6:45312903 Lac2g0394 Lac-Chr2:2889004 9.30E-36 transposed
Lac6g2759 Lac-Chr6:45313439 Lac2g0394 Lac-Chr2:2889004 1.50E-171 transposed
Lac8g2014 Lac-Chr8:38602625 Lac2g0394 Lac-Chr2:2889004 0.00E+00 transposed
Lac1g2669 Lac-Chr1:47943291 Lac2g0394 Lac-Chr2:2889004 0.00E+00 wgd
Lac2g0394 Lac-Chr2:2889004 Lac6g0237 Lac-Chr6:1908518 2.90E-81 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0394 K01537 - csv:101221694 1902.1