Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac2g0394 | ATGGCTTTATTCTCAGATGCTGTTGTCGGCCTTCATCATACTGGCGTTGGATATGGTGTGGTCCTTTTCGACTCCAACGGTGTTATCTGTGCAACTATGGAGGGATTTGACTGTGCGTCATATACATCGTTTGCGGCCGAAGTAAATGCGTTAATTAATGGCATTCGTCTTCTACAAAGAATGGCAATTACTCGTGCATGTGCTTTTTTGGATTCAATCAACACTACCAAGGTGATTCGTGGAGATATCAATACTACATCTGAGGTACATCATTGGATTGTTCAAATTCGGGCAATGAGCAAATCTTTTGAGAGCTTATACTTTAATTATGTTCTAAGACAAGGTAACAAGAAGGTTGATTCTTTAGCCAAGGATGCGTATATTCATAGACGATCTATGCTTTGGCTTGAGAATTTTCCTCAAGATTTGTTATTTTTACGCAATTGCGATCGATTGGTCAAAGATGATGGTTCTGGTTCAAACCAACCAATTATAAAAGAATTTGCAGAACCAGCCACCGGAGGCCATGGAGTCAAAACGAAGCTGCTGAAGAATCAGAGGTCAGAAGGTAATAGACTTGGGATGGAAAGTTATTTGAACGAACATTTCGGGGACGTGAAGCCCAAGAACTCGTCCGATGAAGCGCTTCAGAGATGGAGGCGCCTTTGCTGGTTGGTCAAGAATCGGAAACGGAGGTTTCGATTTACTGCTAATCTCTCTAAACGATTTGAGGCCGATGCTATTAGACGCTCCAATCAGGAGAAGTTTAGAGTTGCAGTTTTGGTTTCACAAGCCGCGCTTCAGTTCATCAATGGGTTGGATTTATCTCCTGATTACGTTGTGCCTGAAGAGGTCAGGCAAGCAGGTTATGAAATTTGTGCTGATGAAGCGGGCTCCATTGTTGATGGCCATGACGTGAAGAAGCTGAAGATTCATGGGGGTGCTGAGGGTATCGCAACTAAGCTTGCCACATCAACGGAGACAGGCATTCCTACTACGGACCATTTGATCAAGAAAAGACAAGAGATTTATGGAATTAACAAATTCACCGAAAGCCCATCTCGAGGATTTTGGCTCTTTGTTTGGGAAGCTCTCCAGGATACGACTTTAATGATACTCGCTTTCTGTGCTGTAGTTTCCCTTCTTGTTGGCATAGTGATGGAAGGATGGCCGAAGGGTGCTCATGATGGGCTCGGCATTGTTGCAAGTATCTTGCTTGTTGTATTTGTCACTGCTACCAGTGACTATAGACAATCGCTTCAGTTCAAGGATTTGGACAGGGAAAAGAAGAAAATTGCGGTTCAGGTTACTCGAAATGGGCTGAGACAAAAGATTTCTATATACGAACTTCTTCCTGGTGATATTGTTCATCTTGCCATGGGTGATCAGGTACCAGCAGATGGACTTTTCGTTTCAGGGTACTCTCTTCTGATAAATGAATCTAGTTTAACAGGTGAGAGCGAACCAGTTAACGTAAATTGTCAAAACCCTTTCCTCTTGTCCGGAACAAAAGTTCAGGATGGTTCGTGTAAGATGGTTGTGACTTCTGTTGGCATGAGGACCCAGTGGGGCAAACTGATGGCCACTCTTAGTGAAGGAGGAGATGATGAGACTCCTTTGCAGGTAAAGCTAAATGGAGTGGCAACAATTATTGGAAAAATAGGTCTGTTTTTTGCTGTCATAACTTTCGCTGTATTGGTTCAAGGATTGTTCAGTCGCAAGCTACAAGAAGGGTCTTACTTCAGCTGGTCTGGAGATGAAGCAATGGAAGTTTTGGAATTCTTTGCTGTTGCCGTTACGATTGTTGTGGTTGCTGTGCCTGAAGGGCTGCCTTTGGCGGTGACACTGAGCCTTGCTTTTGCAATGAAAAAGATGATGAACGATAAGGCACTTGTCAGGCACTTGGCTGCTTGTGAGACGATGGGATCAGCTACTACTATTTGCAGCGACAAAACTGGGACATTGACGACTAACCACATGACTGTTGTGAAAGCTTGCATCTGCAGTAAGGTCAAGGAAGTTAGCAATTCAAGCAAGTGTTCTGATTATCGTTCAGAACTTCCCGACTCCGCTGTGGGTATTTTACTGCAATCGATATTTAACAACACTGGTGGAGAAATCGTCAAGAACAAAGATGGCGAAAATGAGATACTTGGGACGCCCACCGAGTCTGCTCTTCTGGAATTTGGCCTTCTGCTTGGTGGGGATTTCCAAGAAGAACGCCAAAAGTCAAAAATCGCGAGAATCGAGCCCTTCAATTCTGTTAAGAAACGAATGGGTGTTGTTTTGGAGCTCCCATCCGGTGTCTTCCGCGCACACAGCAAAGGTGCTTCAGAGATCGTTTTGGCTTCATGTGACAAAGTTCTTGACTCTAACGGTGAGGCAGTTCCTCTCAATGAAGAGTCCATCAACTTTTTGAAGGAAACCATCGAAGAATTTGCGGGCGAAGCTCTTCGAACATTGTGCCTGGCTTACATGGACATCGAGGGTGAGTATCAGTCTGAAAGTCCGATTCCCGTTAGTGGCTACACGTGCATAGGAATTGTTGGTATCAAGGATCCCGTTCGTCCGGGTGTCAAGGAGTCTGTTGCAATTTGCAAGGCCGCCGGTATAACCGTACGGATGGTTACGGGAGATAACATCACCACCGCCAAAGCAATTGCCAGGGAATGTGGAATTTTGACTGACGATGGTATAGCAATTGAAGGTCCTGAATTCCGGGAGAAGAAGGAGGAAGAGTTGAGTAAAATAGTACCAAAAATTCAGGTTATGGCTCGATCTTCACCAATGGATAAACATACTCTTGTAAAGCACTTACGGACCACTTTTCAAGAAGTCGTTGCAGTGACTGGGGATGGCACAAATGATGCTCCGGCGCTCCATGAAGCAGATATTGGATTAGCTATGGGCATCGCTGGAACTGAGGTGGCAAAAGAGAGTGCCGATGTAATAATTCTCGACGACAACTTCTCTACAATTGCTACTGTTGCCAAATGGGGACGTTCAGTCTACATAAATATCCAAAAGTTTGTTCAGTTTCAGCTAACAGTGAATGTGGTTGCACTTCTCGTCAATTTTTCTTCAGCCTGTTTGACAGGAAATGCTCCCCTCACTGCTGTGCAACTGCTATGGGTCAACATGATAATGGACACACTCGGAGCACTTGCATTGGCAACCGAGCCTCCTACTGATGACTTAATGAAGAGATTGCCAGTTGGTCGGAAAGGGAATTTCATTAGCAATGTGATGTGGAGAAATATCTTAGGGCAGTCAGTATATCAGTTTGTTATAGTTTGGTATCTCCAGACAAGAGGGCAAGCTCTTTTTCATCTTGATGGCCCAGACTCTGGATTGATTCTGAATACACTGATTTTCAATGCATTCGTCTTTTGTCAGGTTTTCAATGAGATAAGCTCAAGAGACATGGAAAAGATAAACGTGTTTGAAGGAATATTGAAGAACTACGTGTTTGTGGCAGTGCTCGCTTGCACTGTCCTTTTCCAGATCATAATCATCCAATTCCTGGGAACGTTTGCAAACACATATCCTCTGAACTCCCAGCAATGGTTTGTCACCGTGTTATTTGGATTTCTTGGCATGCCAATTGCAGCAGCTTTGAAGATGATTCCGGCGCTTGGAGGCGATCCTGAGCTGAACCGAGTGGAACTGGGGCAGACCGGGACAACAGGGACCGAACGGAGGCGGAAGGAACTCGACCCACACGAAGGGTCGAGCATGGGATTGGGCCGAGACGGTCCAATCCCTTCGGCTCGCTCTCCTCCAGAGTCTGCTTCCCGATCAAGCCTTCATGTTGTGTTGCGTTGTCCTGCTTAG | 3834 | 45.07 | MALFSDAVVGLHHTGVGYGVVLFDSNGVICATMEGFDCASYTSFAAEVNALINGIRLLQRMAITRACAFLDSINTTKVIRGDINTTSEVHHWIVQIRAMSKSFESLYFNYVLRQGNKKVDSLAKDAYIHRRSMLWLENFPQDLLFLRNCDRLVKDDGSGSNQPIIKEFAEPATGGHGVKTKLLKNQRSEGNRLGMESYLNEHFGDVKPKNSSDEALQRWRRLCWLVKNRKRRFRFTANLSKRFEADAIRRSNQEKFRVAVLVSQAALQFINGLDLSPDYVVPEEVRQAGYEICADEAGSIVDGHDVKKLKIHGGAEGIATKLATSTETGIPTTDHLIKKRQEIYGINKFTESPSRGFWLFVWEALQDTTLMILAFCAVVSLLVGIVMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIAVQVTRNGLRQKISIYELLPGDIVHLAMGDQVPADGLFVSGYSLLINESSLTGESEPVNVNCQNPFLLSGTKVQDGSCKMVVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGLFSRKLQEGSYFSWSGDEAMEVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICSKVKEVSNSSKCSDYRSELPDSAVGILLQSIFNNTGGEIVKNKDGENEILGTPTESALLEFGLLLGGDFQEERQKSKIARIEPFNSVKKRMGVVLELPSGVFRAHSKGASEIVLASCDKVLDSNGEAVPLNEESINFLKETIEEFAGEALRTLCLAYMDIEGEYQSESPIPVSGYTCIGIVGIKDPVRPGVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKKEEELSKIVPKIQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRKGNFISNVMWRNILGQSVYQFVIVWYLQTRGQALFHLDGPDSGLILNTLIFNAFVFCQVFNEISSRDMEKINVFEGILKNYVFVAVLACTVLFQIIIIQFLGTFANTYPLNSQQWFVTVLFGFLGMPIAAALKMIPALGGDPELNRVELGQTGTTGTERRRKELDPHEGSSMGLGRDGPIPSARSPPESASRSSLHVVLRCPA | 1277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 2889004 | 2899261 | - | Lag0037032.1 | Lac2g0394 | 597658 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac2g0394 | 1277 | NCBIfam | HAD-IC family P-type ATPase | 915 | 1031 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac2g0394 | 1277 | NCBIfam | HAD-IC family P-type ATPase | 744 | 895 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac2g0394 | 1277 | NCBIfam | HAD-IC family P-type ATPase | 581 | 671 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac2g0394 | 1277 | NCBIfam | HAD-IC family P-type ATPase | 400 | 571 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac2g0394 | 1277 | PRINTS | H+-transporting ATPase (proton pump) signature | 806 | 824 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac2g0394 | 1277 | PRINTS | H+-transporting ATPase (proton pump) signature | 950 | 966 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac2g0394 | 1277 | PRINTS | H+-transporting ATPase (proton pump) signature | 982 | 1007 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac2g0394 | 1277 | FunFam | Calcium-transporting ATPase | 211 | 271 | - | - | |
| Lac2g0394 | 1277 | SMART | Cation_ATPase_N_a_2 | 314 | 385 | IPR004014 | - | |
| Lac2g0394 | 1277 | FunFam | Calcium-transporting ATPase | 843 | 995 | - | - | |
| Lac2g0394 | 1277 | Pfam | Cation transport ATPase (P-type) | 709 | 788 | - | - | |
| Lac2g0394 | 1277 | Pfam | E1-E2 ATPase | 431 | 627 | - | - | |
| Lac2g0394 | 1277 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 654 | 859 | IPR023299 | GO:0000166(InterPro) | |
| Lac2g0394 | 1277 | MobiDBLite | consensus disorder prediction | 1229 | 1244 | - | - | |
| Lac2g0394 | 1277 | FunFam | Calcium-transporting ATPase | 411 | 531 | - | - | |
| Lac2g0394 | 1277 | SUPERFAMILY | Calcium ATPase, transduction domain A | 433 | 528 | IPR008250 | - | |
| Lac2g0394 | 1277 | Gene3D | - | 336 | 531 | - | - | |
| Lac2g0394 | 1277 | Gene3D | - | 211 | 271 | - | - | |
| Lac2g0394 | 1277 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 302 | 1211 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lac2g0394 | 1277 | Gene3D | - | 1 | 127 | IPR036397 | GO:0003676(InterPro) | |
| Lac2g0394 | 1277 | Pfam | Cation transporter/ATPase, N-terminus | 312 | 380 | IPR004014 | - | |
| Lac2g0394 | 1277 | PRINTS | P-type cation-transporting ATPase superfamily signature | 847 | 858 | - | - | |
| Lac2g0394 | 1277 | PRINTS | P-type cation-transporting ATPase superfamily signature | 869 | 879 | - | - | |
| Lac2g0394 | 1277 | PRINTS | P-type cation-transporting ATPase superfamily signature | 479 | 493 | - | - | |
| Lac2g0394 | 1277 | PRINTS | P-type cation-transporting ATPase superfamily signature | 974 | 986 | - | - | |
| Lac2g0394 | 1277 | PRINTS | P-type cation-transporting ATPase superfamily signature | 648 | 662 | - | - | |
| Lac2g0394 | 1277 | PRINTS | P-type cation-transporting ATPase superfamily signature | 950 | 969 | - | - | |
| Lac2g0394 | 1277 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 199 | 244 | IPR024750 | GO:0005516(InterPro) | |
| Lac2g0394 | 1277 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 650 | 656 | IPR018303 | - | |
| Lac2g0394 | 1277 | SFLD | Haloacid Dehalogenase | 630 | 1002 | - | - | |
| Lac2g0394 | 1277 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 313 | 1210 | IPR023298 | - | |
| Lac2g0394 | 1277 | SUPERFAMILY | HAD-like | 646 | 1055 | IPR036412 | - | |
| Lac2g0394 | 1277 | Pfam | Reverse transcriptase-like | 17 | 126 | IPR002156 | GO:0003676(InterPro)|GO:0004523(InterPro) | |
| Lac2g0394 | 1277 | PANTHER | CATION TRANSPORTING ATPASE | 281 | 1210 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lac2g0394 | 1277 | SFLD | p-type atpase | 630 | 1002 | IPR044492 | - | |
| Lac2g0394 | 1277 | Gene3D | - | 658 | 854 | IPR023299 | GO:0000166(InterPro) | |
| Lac2g0394 | 1277 | FunFam | Calcium-transporting ATPase | 658 | 854 | - | - | |
| Lac2g0394 | 1277 | Pfam | haloacid dehalogenase-like hydrolase | 824 | 964 | - | - | |
| Lac2g0394 | 1277 | SUPERFAMILY | Ribonuclease H-like | 4 | 129 | IPR012337 | - | |
| Lac2g0394 | 1277 | FunFam | Calcium-transporting ATPase | 967 | 1212 | - | - | |
| Lac2g0394 | 1277 | Pfam | Cation transporting ATPase, C-terminus | 1035 | 1209 | IPR006068 | - | |
| Lac2g0394 | 1277 | CDD | P-type_ATPase_Ca_PMCA-like | 339 | 1083 | - | - | |
| Lac2g0394 | 1277 | Gene3D | - | 363 | 1209 | - | - | |
| Lac2g0394 | 1277 | Gene3D | - | 645 | 995 | IPR023214 | - | |
| Lac2g0394 | 1277 | CDD | RNase_H_like | 3 | 124 | IPR044730 | - | |
| Lac2g0394 | 1277 | MobiDBLite | consensus disorder prediction | 1220 | 1270 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0131 | Lac-Chr13:935310 | Lac2g0394 | Lac-Chr2:2889004 | 2.20E-19 | dispersed | |
| Lac2g0394 | Lac-Chr2:2889004 | Lac7g2071 | Lac-Chr7:33809960 | 0.00E+00 | dispersed | |
| Lac8g2265 | Lac-Chr8:40876067 | Lac2g0394 | Lac-Chr2:2889004 | 2.00E-09 | dispersed | |
| Lac1g3460 | Lac-Chr1:53968980 | Lac2g0394 | Lac-Chr2:2889004 | 7.70E-12 | transposed | |
| Lac2g2519 | Lac-Chr2:37559061 | Lac2g0394 | Lac-Chr2:2889004 | 1.10E-20 | transposed | |
| Lac6g2235 | Lac-Chr6:38981690 | Lac2g0394 | Lac-Chr2:2889004 | 1.50E-254 | transposed | |
| Lac6g2758 | Lac-Chr6:45312903 | Lac2g0394 | Lac-Chr2:2889004 | 9.30E-36 | transposed | |
| Lac6g2759 | Lac-Chr6:45313439 | Lac2g0394 | Lac-Chr2:2889004 | 1.50E-171 | transposed | |
| Lac8g2014 | Lac-Chr8:38602625 | Lac2g0394 | Lac-Chr2:2889004 | 0.00E+00 | transposed | |
| Lac1g2669 | Lac-Chr1:47943291 | Lac2g0394 | Lac-Chr2:2889004 | 0.00E+00 | wgd | |
| Lac2g0394 | Lac-Chr2:2889004 | Lac6g0237 | Lac-Chr6:1908518 | 2.90E-81 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac2g0394 | K01537 | - | csv:101221694 | 1902.1 |