Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0407 ATGGCCGTTCTTGTTTGCAGCTTTTCTGTTTTCTCCGTTGTCCTTTTTCATATCTTCTCCTCCGTCGCGGGCGGCGGCTCTTCCTCGACGGTGAAGTATCTTCCAGGATTTTCAGGTCCTCTCCCTTTCGAACTTGAAACCGGATATGTGGGAGTGGGAGATTCGGAGGAAGTACAATTGTTTTACTATTTTGTGAAATCACAAGGAAATCCTCAAAAGGATCCTCTCATTTTGTGGCACACTGGAGGCCCTGGTTGCTCTGGTTTATCAGTACTTGCCTATGAAATTGGTCCTGTGAATTTCAAGGAGGAGCAATACAATGGGAGTCTACCCCAACTAATTTTGAACCCCTACTCATGGACCAAGAAATCTAGTATCATATTTCTAGATTTGCCCGTGGGTACTGGATTTTCATATGGTAAAACTCCAGAAGCTCTCAAGACGGGAGATTTTGGTCAAGTTCACAATTCTCATCAATTTTTGAGAAAGTGGTTGGCCGATCATCCAGAATTTATATCCAATCCATTCTATGTTGGTGGCGACTCGTATGCTGGTCTTATTGTTCCAGTTGTTACTCATGAAATATCAGAAGGAAATAAGCATATGTTGCCATTAGTGAACCTTCAGGGATACATATTGGGAAATCCTCTCACTATCCGTAATTCAAATAAAAATTTTGAAGTTCCTTTTGCTCATAGGATGACACTCATCTCCGATGAATTATTCGAGTCATTGACAAGTAATTGCAAAGGAGAATATGTGAAGATGGATCCGAATAATGTGGAGTGCTCAAGACATTATGATACATACAAAAAGAGCGTTTCGGGAATTTATGTTGCGTCAATTTTGTTGGCGAAATGTCCGTCAGTGGTGGTCTCTACGAAACAAGAAGATGTGTCGTCTGATGGTCGAAGATCTCTCTACGACACTCTCAAACTACATAATCTCAAGCCACCACTTCCAACCCTTGCCTGTCCTAATTATAAAGACGTACTTTGTTACTACTGGACCAATGACGATCAAGTTCAGAAAGCACTTCACATACGAGAGGGAACCATTGGAGAATGGATTAGATGTCAGATAGGAGACAATTACAATTATGATATTGATAGTTCTTTTCCTTACCATCTGAACCTCAGCTCAAAAGGTTATCCATCTTTGGTCTATAGTGGAGATCATGATATGGTAGTGTCACATTTGGACACTCAAGCATGGATTAGATCTTTGAACTATTCTATTATCGATGATTGGAGACCATGGTTCATCAAGGACCAAGTGGCCGGGTATACAAGAACCTATGCAAATAGGATGACATTTGCAACCATAAAGGGTGGAGGGCACACAGCAGAATACACACGGAAAGAATGCAGCATAATTTTTAATAGATGGATAACTAACAAAGCATTGTAA 1410 40.78 MAVLVCSFSVFSVVLFHIFSSVAGGGSSSTVKYLPGFSGPLPFELETGYVGVGDSEEVQLFYYFVKSQGNPQKDPLILWHTGGPGCSGLSVLAYEIGPVNFKEEQYNGSLPQLILNPYSWTKKSSIIFLDLPVGTGFSYGKTPEALKTGDFGQVHNSHQFLRKWLADHPEFISNPFYVGGDSYAGLIVPVVTHEISEGNKHMLPLVNLQGYILGNPLTIRNSNKNFEVPFAHRMTLISDELFESLTSNCKGEYVKMDPNNVECSRHYDTYKKSVSGIYVASILLAKCPSVVVSTKQEDVSSDGRRSLYDTLKLHNLKPPLPTLACPNYKDVLCYYWTNDDQVQKALHIREGTIGEWIRCQIGDNYNYDIDSSFPYHLNLSSKGYPSLVYSGDHDMVVSHLDTQAWIRSLNYSIIDDWRPWFIKDQVAGYTRTYANRMTFATIKGGGHTAEYTRKECSIIFNRWITNKAL 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2974242 2979270 - Lag0037045.1 Lac2g0407 597671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0407 469 Pfam Serine carboxypeptidase 35 466 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0407 469 Gene3D - 324 468 - -
Lac2g0407 469 FunFam Carboxypeptidase 324 468 - -
Lac2g0407 469 Gene3D alpha/beta hydrolase 26 297 IPR029058 -
Lac2g0407 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0407 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0407 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0407 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0407 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 463 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Lac2g0407 469 SUPERFAMILY alpha/beta-Hydrolases 30 467 IPR029058 -
Lac2g0407 469 FunFam Serine carboxypeptidase-like 11 25 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0407 Lac-Chr2:2974242 Lac4g1689 Lac-Chr4:35670136 2.60E-184 dispersed
Lac2g0407 Lac-Chr2:2974242 Lac2g0408 Lac-Chr2:2985560 1.30E-199 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0407 K16296 - csv:101210918 572.007