Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0408 | ATGCCCGCCGCCGTCTTCCGCTTCTCTGTTCTCTTCGTCGGTTTTTTTCAGCTCATCTCCGCTGCCGCAGGGTCTCACTCGACGGTGGAGTTCCTGCCGGGATTTGCAGGTCCTCTTCCATTCGAACTGGAAACTGGATATGTGGGTGTCGGAGATTTTGAGGAAGTGCAATTGTTTTATTACTTTGTCAAATCCGAAGGAAATCCTCAGACGGATCCTCTGCTTTTTTGGCTCACCGGTGGCCCTGGTTGCTCTGCTTTCACTGCACTTGCCTTTGAAGTTGGTCCTATCAATTTTAAGTTAGAGCCATACAATGGAAGCTTACCTCAGGTTATCTTGAACCCTTATTCATGGACGAAGAAATCCAATATATTATTTGTAGATTTGCCGGTGGGCACTGGATTTTCATATGGTAAAACTCCCCAATCTCTTGAGACAGGAGATTTTAGTCTAGTTCGTCATTCCATTCAATTTTTGAAAAAGTGGTTTGAAGTTGACCATCCAGAATTTATATTTAATCCTTTTTATGTGGGTGGAGATTCATACGCTGGTATGGTTATTCCCGTTATTGCTAAAGAAATTTTAGAAGAAAATAAGCATGCTTTACCAAATCTTCAGGGATACATATTGGGAAATCCTGTCACCAATCATAGTTCAAATAAAAATTTTGCAATTCCTTATGCTCATAGGATGACCCTCATTTCTGATGAATTATTCGAGTCATTGAGCACCAGCTGCAAGGGAGACTACGTGAATATTGATCCAACCAATGTGGATTGCTTAAGACATTATGATGCTTACGAAAAGTGTGTTTCAAATCTCGAGGAAGCAAATATTTTGTTGCCAAAATGTTCGTTTCGTTCTCCAAAGCAACACGAAGATGCATTTCATCGAAGATCTCTGTACAACACTCCCAAACTGTTCCTTGATCCAATGCCACCACTTCCTTCTCTTGATTGTCCTGCGTATAAGTTTCAACTGTCTTTTTATTGGGCTAACGACGATCAAGTTCGAAAAGCACTTCATATACGTGAGGGAAGCATTGGAGAATGGATAAGATGTAAGAATCGAGACAACTACAACTATGAAATTGAGAGTGCTTTTCCTTATCATGTGAACCTTAGTTCTAAAGGTTACAGGTCTTTAATCTATAGTGGGGATCATGATATGATGGTACCACATTTGGACACTCAAGCGTGGATTAGATCTTTAAATTATTCCATTGTTGATGACTGGAGACCTTGGTTTATCACGGATCAAGTAGCCGGATATACAAGAACCTATGCAAATAAGATGACATTTGCAACCATAAAAGGCGGAGGTCACACAGCAGAATACACACAAAAAGAATGTAGTGTAGTGTTTAGTAGATGGATAAGTGGAGAATCCTTGTAA | 1395 | 40.36 | MPAAVFRFSVLFVGFFQLISAAAGSHSTVEFLPGFAGPLPFELETGYVGVGDFEEVQLFYYFVKSEGNPQTDPLLFWLTGGPGCSAFTALAFEVGPINFKLEPYNGSLPQVILNPYSWTKKSNILFVDLPVGTGFSYGKTPQSLETGDFSLVRHSIQFLKKWFEVDHPEFIFNPFYVGGDSYAGMVIPVIAKEILEENKHALPNLQGYILGNPVTNHSSNKNFAIPYAHRMTLISDELFESLSTSCKGDYVNIDPTNVDCLRHYDAYEKCVSNLEEANILLPKCSFRSPKQHEDAFHRRSLYNTPKLFLDPMPPLPSLDCPAYKFQLSFYWANDDQVRKALHIREGSIGEWIRCKNRDNYNYEIESAFPYHVNLSSKGYRSLIYSGDHDMMVPHLDTQAWIRSLNYSIVDDWRPWFITDQVAGYTRTYANKMTFATIKGGGHTAEYTQKECSVVFSRWISGESL | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2985560 | 2990377 | - | Lag0037046.1 | Lac2g0408 | 597672 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0408 | 464 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 26 | 458 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER) | |
Lac2g0408 | 464 | Gene3D | alpha/beta hydrolase | 23 | 294 | IPR029058 | - | |
Lac2g0408 | 464 | FunFam | Serine carboxypeptidase-like 11 | 23 | 464 | - | - | |
Lac2g0408 | 464 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 163 | 188 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Lac2g0408 | 464 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 127 | 137 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Lac2g0408 | 464 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 432 | 445 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Lac2g0408 | 464 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 114 | 126 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
Lac2g0408 | 464 | FunFam | Carboxypeptidase | 319 | 463 | - | - | |
Lac2g0408 | 464 | Gene3D | - | 319 | 464 | - | - | |
Lac2g0408 | 464 | SUPERFAMILY | alpha/beta-Hydrolases | 29 | 462 | IPR029058 | - | |
Lac2g0408 | 464 | Pfam | Serine carboxypeptidase | 33 | 461 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0403 | Lac-Chr2:2951377 | Lac2g0408 | Lac-Chr2:2985560 | 1.00E-180 | dispersed | |
Lac2g0404 | Lac-Chr2:2964353 | Lac2g0408 | Lac-Chr2:2985560 | 6.00E-65 | dispersed | |
Lac2g0408 | Lac-Chr2:2985560 | Lac4g1689 | Lac-Chr4:35670136 | 9.30E-227 | dispersed | |
Lac2g0407 | Lac-Chr2:2974242 | Lac2g0408 | Lac-Chr2:2985560 | 1.30E-199 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0408 | K16296 | - | csv:101207623 | 590.112 |