Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0408 ATGCCCGCCGCCGTCTTCCGCTTCTCTGTTCTCTTCGTCGGTTTTTTTCAGCTCATCTCCGCTGCCGCAGGGTCTCACTCGACGGTGGAGTTCCTGCCGGGATTTGCAGGTCCTCTTCCATTCGAACTGGAAACTGGATATGTGGGTGTCGGAGATTTTGAGGAAGTGCAATTGTTTTATTACTTTGTCAAATCCGAAGGAAATCCTCAGACGGATCCTCTGCTTTTTTGGCTCACCGGTGGCCCTGGTTGCTCTGCTTTCACTGCACTTGCCTTTGAAGTTGGTCCTATCAATTTTAAGTTAGAGCCATACAATGGAAGCTTACCTCAGGTTATCTTGAACCCTTATTCATGGACGAAGAAATCCAATATATTATTTGTAGATTTGCCGGTGGGCACTGGATTTTCATATGGTAAAACTCCCCAATCTCTTGAGACAGGAGATTTTAGTCTAGTTCGTCATTCCATTCAATTTTTGAAAAAGTGGTTTGAAGTTGACCATCCAGAATTTATATTTAATCCTTTTTATGTGGGTGGAGATTCATACGCTGGTATGGTTATTCCCGTTATTGCTAAAGAAATTTTAGAAGAAAATAAGCATGCTTTACCAAATCTTCAGGGATACATATTGGGAAATCCTGTCACCAATCATAGTTCAAATAAAAATTTTGCAATTCCTTATGCTCATAGGATGACCCTCATTTCTGATGAATTATTCGAGTCATTGAGCACCAGCTGCAAGGGAGACTACGTGAATATTGATCCAACCAATGTGGATTGCTTAAGACATTATGATGCTTACGAAAAGTGTGTTTCAAATCTCGAGGAAGCAAATATTTTGTTGCCAAAATGTTCGTTTCGTTCTCCAAAGCAACACGAAGATGCATTTCATCGAAGATCTCTGTACAACACTCCCAAACTGTTCCTTGATCCAATGCCACCACTTCCTTCTCTTGATTGTCCTGCGTATAAGTTTCAACTGTCTTTTTATTGGGCTAACGACGATCAAGTTCGAAAAGCACTTCATATACGTGAGGGAAGCATTGGAGAATGGATAAGATGTAAGAATCGAGACAACTACAACTATGAAATTGAGAGTGCTTTTCCTTATCATGTGAACCTTAGTTCTAAAGGTTACAGGTCTTTAATCTATAGTGGGGATCATGATATGATGGTACCACATTTGGACACTCAAGCGTGGATTAGATCTTTAAATTATTCCATTGTTGATGACTGGAGACCTTGGTTTATCACGGATCAAGTAGCCGGATATACAAGAACCTATGCAAATAAGATGACATTTGCAACCATAAAAGGCGGAGGTCACACAGCAGAATACACACAAAAAGAATGTAGTGTAGTGTTTAGTAGATGGATAAGTGGAGAATCCTTGTAA 1395 40.36 MPAAVFRFSVLFVGFFQLISAAAGSHSTVEFLPGFAGPLPFELETGYVGVGDFEEVQLFYYFVKSEGNPQTDPLLFWLTGGPGCSAFTALAFEVGPINFKLEPYNGSLPQVILNPYSWTKKSNILFVDLPVGTGFSYGKTPQSLETGDFSLVRHSIQFLKKWFEVDHPEFIFNPFYVGGDSYAGMVIPVIAKEILEENKHALPNLQGYILGNPVTNHSSNKNFAIPYAHRMTLISDELFESLSTSCKGDYVNIDPTNVDCLRHYDAYEKCVSNLEEANILLPKCSFRSPKQHEDAFHRRSLYNTPKLFLDPMPPLPSLDCPAYKFQLSFYWANDDQVRKALHIREGSIGEWIRCKNRDNYNYEIESAFPYHVNLSSKGYRSLIYSGDHDMMVPHLDTQAWIRSLNYSIVDDWRPWFITDQVAGYTRTYANKMTFATIKGGGHTAEYTQKECSVVFSRWISGESL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2985560 2990377 - Lag0037046.1 Lac2g0408 597672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0408 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 458 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Lac2g0408 464 Gene3D alpha/beta hydrolase 23 294 IPR029058 -
Lac2g0408 464 FunFam Serine carboxypeptidase-like 11 23 464 - -
Lac2g0408 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0408 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0408 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0408 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Lac2g0408 464 FunFam Carboxypeptidase 319 463 - -
Lac2g0408 464 Gene3D - 319 464 - -
Lac2g0408 464 SUPERFAMILY alpha/beta-Hydrolases 29 462 IPR029058 -
Lac2g0408 464 Pfam Serine carboxypeptidase 33 461 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0403 Lac-Chr2:2951377 Lac2g0408 Lac-Chr2:2985560 1.00E-180 dispersed
Lac2g0404 Lac-Chr2:2964353 Lac2g0408 Lac-Chr2:2985560 6.00E-65 dispersed
Lac2g0408 Lac-Chr2:2985560 Lac4g1689 Lac-Chr4:35670136 9.30E-227 dispersed
Lac2g0407 Lac-Chr2:2974242 Lac2g0408 Lac-Chr2:2985560 1.30E-199 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0408 K16296 - csv:101207623 590.112