Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0412 ATGCCGATGTACCAGCCTTCCGGTCGGAGAAGAGAGGCCGATTCGGAGCTGGGTGTGGGTTTGGGCGGTGGTGGTGGGCAAGTTCTTGATGTCGAAACCGCCGTGAAAGATGGTATTCTTGGCGGCGGTGGCGGGTTAATCTGCGACGGTGGAGGGGTTGAGAAATTGGATCTGAAGGAGATGGTGGAGGAACTTGAGAACATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTATGAACGATCCAATATCCTCAAATGGTTTTCTCTTGGCCATTTCACTTGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTGATTTACAGTTGGTTTACACAGAAGTATTTGGCGATGAAGAAGAGGTCTGAGGACGTGCAGGGCAGAGCTCTTGAACTCTTAGACACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGAGCTTCGGCAAGTCGTGGCCTCGAATTCTTCGGCGAAGAAGACTGTGGAAGACAATGGCGGTCTTGCTCTGATTTCATCGTTGTTGGGTCCTTTCACTTCTCATGCGGTTGGCTCTGAAGCCATTGGGATTTTGGTGAATTTGGATCTTGATGCCGAGTCGAGGAGGAACCTTGTTCAACCTGCGAAGATTTCGCTAATGGTGGATATGTTGAATGAGGGATCATCGGAGACCAAAATCAACTGCACTGGATTGATTGAAACTTTGCTGGAAGGGGACAACTGTGGAGCGGAAACTGTCTCGAGTTTAAGTCTCTTGGTTGGATTGTTAAGATTAATCAAGGAAAAGAAGCACCCAAATGGAGTTCTTGCTGGATTAAGATTGCTAAAAGCTCTGTGCTCCCAAGAACCAGTAAGGAACTCAGTAGTGAGCATTGGGGCAATCCCACAGTTGATCGAAATTCTCCCGAATTTCGACCCGGATTGTTTGGAGCTAGCCCTTCATGTATTGGACTCACTCACATCCCTCTCGGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAACACCATTCCAAACTTGGTCAAGTTGTTGCTGAGAGTCTCAGAGAGCTGCACTCAGCTGGCTTTATCAATCTTATGGGCAGTTTGTAAACTCGCCCCTGAAGAATGTGCATCACAAGCTGTGGAAGCAGGCTTAGCAGCTAAGCTTCTTTTGATTCAGTGCGGTTGCAATCCCGATCTGAAACAGCGCTCCGCCGAGCTCCTGAAGCTCTGCAGCTTAAACTACACAGCAACCCTCTTCATTTCCAAGTGTAAGCTTACAAGGACAATACAATAA 1362 48.31 MPMYQPSGRRREADSELGVGLGGGGGQVLDVETAVKDGILGGGGGLICDGGGVEKLDLKEMVEELENIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFTQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKELRQVVASNSSAKKTVEDNGGLALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLMVDMLNEGSSETKINCTGLIETLLEGDNCGAETVSSLSLLVGLLRLIKEKKHPNGVLAGLRLLKALCSQEPVRNSVVSIGAIPQLIEILPNFDPDCLELALHVLDSLTSLSEGRVALKDCPNTIPNLVKLLLRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLIQCGCNPDLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3024051 3025412 + Lag0037050.1 Lac2g0412 597676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0412 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 149 IPR013083 -
Lac2g0412 453 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac2g0412 453 SUPERFAMILY ARM repeat 144 436 IPR016024 -
Lac2g0412 453 CDD RING-Ubox_PUB 71 121 IPR045210 -
Lac2g0412 453 Gene3D - 150 275 IPR011989 -
Lac2g0412 453 Pfam U-box domain 70 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac2g0412 453 SUPERFAMILY RING/U-box 64 140 - -
Lac2g0412 453 Gene3D - 276 432 IPR011989 -
Lac2g0412 453 PANTHER WDSAM1 PROTEIN 66 448 IPR045185 GO:0061630(InterPro)
Lac2g0412 453 SMART Ubox_2 73 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0412 Lac-Chr2:3024051 Lac5g2555 Lac-Chr5:44126330 1.60E-29 dispersed
Lac2g0412 Lac-Chr2:3024051 Lac6g0235 Lac-Chr6:1897139 1.20E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0412 - - - 0.0