Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0425 | ATGACTATGGAAGTTACTTCCGAGTCTCAGCAACATTCTCACTACCACAACCAAAGCCAGGCAACTTCAGTAGCCGCTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCAGCACTATAATGGCGATTTGCTTTCTCCCTTGTCTGTAATGCCACTCAAGTCAGATGGGTCTCTTTGTATCATGGAGTCAATCAACACATCACAACCTCAAGAAATATTGCCAAATCTCTCACCAAAGCTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGGGAGGCCACTGCTTTAAGCTTGGACAGCATATATTACAATCAAAATGCTGAGGCTGACTCAGACAGACAACACTCTTTGAACCTTTTTAAGCAACAAGAGCAACAGCATATTCTTTTTCAATCTCAGCGATACTATTCTGGAATGTACCAGTTTTCAGCTGAGGATGCCAACAAGGAAGCTCATTTTGCAAGCTATTGTTCTGATATTCGCCTAGCTATGGAGCAGCGCATCAATGGCTGCTATGGAGGGATGAATTGCCAAGACTTGCAGCCACTTAGCTTGTCAATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTAATCCAAGTCAAATTTCTCAATCTGGACCAGCCACCATAGAAACAAAGAAAAGGGGTCTGCCCGGTCATAAGCAGCCGGTCCATCGGAAATCGATCGACACATTTGGACAAAGAACTTCGCAGTACAGAGGTGTTACGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGCTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACATTTAAACTTCCCGTTAAAGAACTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATACGTTGCGCACCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGAAGAGTCGCCGGGAATAAAGACCTCTATCTGGGAACATTTGGCACACAAGAGGAAGCAGCTGAAGCATATGATATAGCAGCCATCAAATTCCGTGGTGTAAACGCCGTTACGAACTTCGACACTTCAAGGTACAATGTAGAGAGGATCGTGGCGAGCAGCAGCCTCCTTTCAGGGGAGTTTGCAAGACGAAACAAAGAGCACAAACCAACCAATGCAACCGAGCACAAAGAACCAAACCAGAACATAGCTCAAATCGACCCCTCGGAGATATCCAACAGCAACAACTTAGATTGGAGGACAGTATTCCACGACAACCCGCTGCTGGATCCAAACGCAACCGTCGAATCCATAGACCAAAAGTCCATGACTTCCAGCAGTTACCTGAACCATCTGTATGGAGTCGAAACCGTAAGTTGCAATCACGCAATGGCGAACGATTCAAGCAAGTTCAAGGCACATTTCTCCAATGCTTCCTCTGTGGTGAGCAGCCTGAGCAGCTCAAGGGAAACAAGTCCTGATAAGTCAAATGCCTCATCCTCAGTATTGCTTGCAAAAGCCCCATATGGAAGCAGCAATGGAAGCATTTGGGTGCCATCAACTCAACAAATAAGGCCAGCTCCCATTTCTTTGCCTGTTGTGTCAACTGTTTGGAATGATGTCTGA | 1734 | 45.62 | MTMEVTSESQQHSHYHNQSQATSVAAVSNTMSNSFLASQHYNGDLLSPLSVMPLKSDGSLCIMESINTSQPQEILPNLSPKLEDFLGGATHGREATALSLDSIYYNQNAEADSDRQHSLNLFKQQEQQHILFQSQRYYSGMYQFSAEDANKEAHFASYCSDIRLAMEQRINGCYGGMNCQDLQPLSLSMSPGSQSSCVTNPSQISQSGPATIETKKRGLPGHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAVTNFDTSRYNVERIVASSSLLSGEFARRNKEHKPTNATEHKEPNQNIAQIDPSEISNSNNLDWRTVFHDNPLLDPNATVESIDQKSMTSSSYLNHLYGVETVSCNHAMANDSSKFKAHFSNASSVVSSLSSSRETSPDKSNASSSVLLAKAPYGSSNGSIWVPSTQQIRPAPISLPVVSTVWNDV | 577 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3095792 | 3098478 | + | Lag0037063.1 | Lac2g0425 | 597689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0425 | 577 | Gene3D | AP2/ERF domain | 239 | 305 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | Gene3D | AP2/ERF domain | 339 | 399 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | SMART | rav1_2 | 339 | 403 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | SMART | rav1_2 | 240 | 309 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | Pfam | AP2 domain | 240 | 295 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | Pfam | AP2 domain | 340 | 389 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | FunFam | AP2-like ethylene-responsive transcription factor | 338 | 399 | - | - | |
Lac2g0425 | 577 | CDD | AP2 | 239 | 303 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | SUPERFAMILY | DNA-binding domain | 239 | 304 | IPR016177 | GO:0003677(InterPro) | |
Lac2g0425 | 577 | ProSiteProfiles | AP2/ERF domain profile. | 339 | 397 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | SUPERFAMILY | DNA-binding domain | 338 | 398 | IPR016177 | GO:0003677(InterPro) | |
Lac2g0425 | 577 | MobiDBLite | consensus disorder prediction | 418 | 438 | - | - | |
Lac2g0425 | 577 | CDD | AP2 | 338 | 399 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | ProSiteProfiles | AP2/ERF domain profile. | 240 | 303 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | PRINTS | Ethylene responsive element binding protein signature | 379 | 399 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | PRINTS | Ethylene responsive element binding protein signature | 241 | 252 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0425 | 577 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lac2g0425 | 577 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 118 | 475 | - | - | |
Lac2g0425 | 577 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 239 | 305 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0425 | Lac-Chr2:3095792 | Lac9g2842 | Lac-Chr9:46412527 | 5.40E-91 | dispersed | |
Lac4g1954 | Lac-Chr4:39050915 | Lac2g0425 | Lac-Chr2:3095792 | 4.80E-07 | transposed | |
Lac1g2705 | Lac-Chr1:48271738 | Lac2g0425 | Lac-Chr2:3095792 | 7.80E-136 | wgd | |
Lac2g0425 | Lac-Chr2:3095792 | Lac6g0226 | Lac-Chr6:1805209 | 1.30E-148 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23446 | PF00847 | AP2 | 3.80E-10 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0425 | K09285 | - | csv:101212143 | 900.197 |