Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0425 ATGACTATGGAAGTTACTTCCGAGTCTCAGCAACATTCTCACTACCACAACCAAAGCCAGGCAACTTCAGTAGCCGCTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCAGCACTATAATGGCGATTTGCTTTCTCCCTTGTCTGTAATGCCACTCAAGTCAGATGGGTCTCTTTGTATCATGGAGTCAATCAACACATCACAACCTCAAGAAATATTGCCAAATCTCTCACCAAAGCTTGAGGACTTTCTTGGTGGTGCAACTCATGGAAGGGAGGCCACTGCTTTAAGCTTGGACAGCATATATTACAATCAAAATGCTGAGGCTGACTCAGACAGACAACACTCTTTGAACCTTTTTAAGCAACAAGAGCAACAGCATATTCTTTTTCAATCTCAGCGATACTATTCTGGAATGTACCAGTTTTCAGCTGAGGATGCCAACAAGGAAGCTCATTTTGCAAGCTATTGTTCTGATATTCGCCTAGCTATGGAGCAGCGCATCAATGGCTGCTATGGAGGGATGAATTGCCAAGACTTGCAGCCACTTAGCTTGTCAATGAGTCCTGGTTCTCAGTCTAGTTGTGTTACTAATCCAAGTCAAATTTCTCAATCTGGACCAGCCACCATAGAAACAAAGAAAAGGGGTCTGCCCGGTCATAAGCAGCCGGTCCATCGGAAATCGATCGACACATTTGGACAAAGAACTTCGCAGTACAGAGGTGTTACGAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAATAGCTGTAAGAAGGAAGGCCAAACCAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCCACACATTTAAACTTCCCGTTAAAGAACTATCAAGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATACGTTGCGCACCTGAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCAATATACAGAGGAGTAACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGAAGAGTCGCCGGGAATAAAGACCTCTATCTGGGAACATTTGGCACACAAGAGGAAGCAGCTGAAGCATATGATATAGCAGCCATCAAATTCCGTGGTGTAAACGCCGTTACGAACTTCGACACTTCAAGGTACAATGTAGAGAGGATCGTGGCGAGCAGCAGCCTCCTTTCAGGGGAGTTTGCAAGACGAAACAAAGAGCACAAACCAACCAATGCAACCGAGCACAAAGAACCAAACCAGAACATAGCTCAAATCGACCCCTCGGAGATATCCAACAGCAACAACTTAGATTGGAGGACAGTATTCCACGACAACCCGCTGCTGGATCCAAACGCAACCGTCGAATCCATAGACCAAAAGTCCATGACTTCCAGCAGTTACCTGAACCATCTGTATGGAGTCGAAACCGTAAGTTGCAATCACGCAATGGCGAACGATTCAAGCAAGTTCAAGGCACATTTCTCCAATGCTTCCTCTGTGGTGAGCAGCCTGAGCAGCTCAAGGGAAACAAGTCCTGATAAGTCAAATGCCTCATCCTCAGTATTGCTTGCAAAAGCCCCATATGGAAGCAGCAATGGAAGCATTTGGGTGCCATCAACTCAACAAATAAGGCCAGCTCCCATTTCTTTGCCTGTTGTGTCAACTGTTTGGAATGATGTCTGA 1734 45.62 MTMEVTSESQQHSHYHNQSQATSVAAVSNTMSNSFLASQHYNGDLLSPLSVMPLKSDGSLCIMESINTSQPQEILPNLSPKLEDFLGGATHGREATALSLDSIYYNQNAEADSDRQHSLNLFKQQEQQHILFQSQRYYSGMYQFSAEDANKEAHFASYCSDIRLAMEQRINGCYGGMNCQDLQPLSLSMSPGSQSSCVTNPSQISQSGPATIETKKRGLPGHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAVTNFDTSRYNVERIVASSSLLSGEFARRNKEHKPTNATEHKEPNQNIAQIDPSEISNSNNLDWRTVFHDNPLLDPNATVESIDQKSMTSSSYLNHLYGVETVSCNHAMANDSSKFKAHFSNASSVVSSLSSSRETSPDKSNASSSVLLAKAPYGSSNGSIWVPSTQQIRPAPISLPVVSTVWNDV 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3095792 3098478 + Lag0037063.1 Lac2g0425 597689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0425 577 Gene3D AP2/ERF domain 239 305 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 SMART rav1_2 339 403 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 SMART rav1_2 240 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 Pfam AP2 domain 240 295 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 Pfam AP2 domain 340 389 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 FunFam AP2-like ethylene-responsive transcription factor 338 399 - -
Lac2g0425 577 CDD AP2 239 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 SUPERFAMILY DNA-binding domain 239 304 IPR016177 GO:0003677(InterPro)
Lac2g0425 577 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 SUPERFAMILY DNA-binding domain 338 398 IPR016177 GO:0003677(InterPro)
Lac2g0425 577 MobiDBLite consensus disorder prediction 418 438 - -
Lac2g0425 577 CDD AP2 338 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 ProSiteProfiles AP2/ERF domain profile. 240 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0425 577 MobiDBLite consensus disorder prediction 1 22 - -
Lac2g0425 577 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 475 - -
Lac2g0425 577 FunFam AP2-like ethylene-responsive transcription factor ANT 239 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0425 Lac-Chr2:3095792 Lac9g2842 Lac-Chr9:46412527 5.40E-91 dispersed
Lac4g1954 Lac-Chr4:39050915 Lac2g0425 Lac-Chr2:3095792 4.80E-07 transposed
Lac1g2705 Lac-Chr1:48271738 Lac2g0425 Lac-Chr2:3095792 7.80E-136 wgd
Lac2g0425 Lac-Chr2:3095792 Lac6g0226 Lac-Chr6:1805209 1.30E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23446 PF00847 AP2 3.80E-10 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0425 K09285 - csv:101212143 900.197