Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0427 | ATGGGTGATCTCGAAAATGACGAAATGGGTTTTAGAAATTCGAATGAGGGGTTACTGAATTGTCCATCTTCGGATAAACTTTCGGGAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGCGAGAATTTTGGAGCAGCGTCAATGGTCTCCTCTCATGGCGAATTTTCAAATTCGTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGCACAACGCAAACTGTTCATTATCCGACAGATTTGGAGATGGGGACGAAGCTGCCATGTTTTGGGAGTGGGAATTATTCCGACATGTTTGGTTCTTTTGGTCTTGCTGGTCAGATTCTTGGAGGGTGTTCTTCAAATTACAGAAATGGAGGATCGACCAACACTGCTCAAACATCACAAGAAAATTTACCACCATCTGGTGAAGAAGCTGGTTTAGGATCGCCAAGTGGTAAAATCAGAAAACGAGCCCTTGATTCCACTTTCCCATTTAGCCCAAATAAGAAATCTGAAGGGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAGAATTTACGAGGAAAAGCAACTGGAAAACAAACAAAAGAGAAGTCTAATAACAGTGGTGAAGCTCCAAAGGAAAATTACATTCATGTGCGAGCTAGAAGAGGGCAGGCCACAAACAGCCACAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAGAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATGTCGATATCGAAAGGATTTTATCCAAAGATATTTTCCACACACGGGGTGGCAATGGAACTGTACTTGGATTTGATCCCGGGTTGAGCGCCGTTCCCCCGGTCCCTCCTCATCGAATGTTTCAGTTTCAGGGGACGATGTCGAATATGCCAACCACATCCACACAGTTTCCTCCTCTGCCTCAGACTATGTTAGACAGCGATCTCCAAAGTCTTCTTCAAATGGGATTCGACTCCGGTTCGGCCATAGACAATTTGGGACCAAATGGGAGGTTGAAACCAGAGCGCTAA | 1200 | 44.67 | MGDLENDEMGFRNSNEGLLNCPSSDKLSGTMAMGSFFGSGWDPLVSLGQSENFGAASMVSSHGEFSNSFPVVLENHGGSGTTQTVHYPTDLEMGTKLPCFGSGNYSDMFGSFGLAGQILGGCSSNYRNGGSTNTAQTSQENLPPSGEEAGLGSPSGKIRKRALDSTFPFSPNKKSEGKLKKDVSGDSSSTQEEKNAEMEQNLRGKATGKQTKEKSNNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFHTRGGNGTVLGFDPGLSAVPPVPPHRMFQFQGTMSNMPTTSTQFPPLPQTMLDSDLQSLLQMGFDSGSAIDNLGPNGRLKPER | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3116135 | 3118123 | + | Lag0037065.1 | Lac2g0427 | 597691 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0427 | 399 | MobiDBLite | consensus disorder prediction | 174 | 210 | - | - | |
Lac2g0427 | 399 | MobiDBLite | consensus disorder prediction | 130 | 144 | - | - | |
Lac2g0427 | 399 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 233 | 300 | IPR036638 | GO:0046983(InterPro) | |
Lac2g0427 | 399 | SMART | finulus | 241 | 291 | IPR011598 | GO:0046983(InterPro) | |
Lac2g0427 | 399 | MobiDBLite | consensus disorder prediction | 130 | 225 | - | - | |
Lac2g0427 | 399 | CDD | bHLH_AtBPE_like | 225 | 310 | - | - | |
Lac2g0427 | 399 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 130 | 365 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lac2g0427 | 399 | FunFam | Basic helix-loop-helix transcription factor | 232 | 304 | - | - | |
Lac2g0427 | 399 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 235 | 285 | IPR011598 | GO:0046983(InterPro) | |
Lac2g0427 | 399 | Gene3D | - | 232 | 305 | IPR036638 | GO:0046983(InterPro) | |
Lac2g0427 | 399 | Pfam | Helix-loop-helix DNA-binding domain | 238 | 286 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0418 | Lac-Chr13:2925494 | Lac2g0427 | Lac-Chr2:3116135 | 1.50E-45 | dispersed | |
Lac2g0427 | Lac-Chr2:3116135 | Lac8g2147 | Lac-Chr8:39867065 | 2.60E-44 | dispersed | |
Lac2g0427 | Lac-Chr2:3116135 | Lac4g2957 | Lac-Chr4:47881544 | 5.70E-07 | wgd | |
Lac2g0427 | Lac-Chr2:3116135 | Lac6g0252 | Lac-Chr6:2037952 | 3.00E-08 | wgd | |
Lac2g0427 | Lac-Chr2:3116135 | Lac6g0225 | Lac-Chr6:1793054 | 3.90E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23447 | PF00010 | HLH | 4.10E-06 | No_clan | Lac | TF |
Pathway information
