Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0427 ATGGGTGATCTCGAAAATGACGAAATGGGTTTTAGAAATTCGAATGAGGGGTTACTGAATTGTCCATCTTCGGATAAACTTTCGGGAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGCGAGAATTTTGGAGCAGCGTCAATGGTCTCCTCTCATGGCGAATTTTCAAATTCGTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGCACAACGCAAACTGTTCATTATCCGACAGATTTGGAGATGGGGACGAAGCTGCCATGTTTTGGGAGTGGGAATTATTCCGACATGTTTGGTTCTTTTGGTCTTGCTGGTCAGATTCTTGGAGGGTGTTCTTCAAATTACAGAAATGGAGGATCGACCAACACTGCTCAAACATCACAAGAAAATTTACCACCATCTGGTGAAGAAGCTGGTTTAGGATCGCCAAGTGGTAAAATCAGAAAACGAGCCCTTGATTCCACTTTCCCATTTAGCCCAAATAAGAAATCTGAAGGGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAGAATTTACGAGGAAAAGCAACTGGAAAACAAACAAAAGAGAAGTCTAATAACAGTGGTGAAGCTCCAAAGGAAAATTACATTCATGTGCGAGCTAGAAGAGGGCAGGCCACAAACAGCCACAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAGAGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATGTCGATATCGAAAGGATTTTATCCAAAGATATTTTCCACACACGGGGTGGCAATGGAACTGTACTTGGATTTGATCCCGGGTTGAGCGCCGTTCCCCCGGTCCCTCCTCATCGAATGTTTCAGTTTCAGGGGACGATGTCGAATATGCCAACCACATCCACACAGTTTCCTCCTCTGCCTCAGACTATGTTAGACAGCGATCTCCAAAGTCTTCTTCAAATGGGATTCGACTCCGGTTCGGCCATAGACAATTTGGGACCAAATGGGAGGTTGAAACCAGAGCGCTAA 1200 44.67 MGDLENDEMGFRNSNEGLLNCPSSDKLSGTMAMGSFFGSGWDPLVSLGQSENFGAASMVSSHGEFSNSFPVVLENHGGSGTTQTVHYPTDLEMGTKLPCFGSGNYSDMFGSFGLAGQILGGCSSNYRNGGSTNTAQTSQENLPPSGEEAGLGSPSGKIRKRALDSTFPFSPNKKSEGKLKKDVSGDSSSTQEEKNAEMEQNLRGKATGKQTKEKSNNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFHTRGGNGTVLGFDPGLSAVPPVPPHRMFQFQGTMSNMPTTSTQFPPLPQTMLDSDLQSLLQMGFDSGSAIDNLGPNGRLKPER 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3116135 3118123 + Lag0037065.1 Lac2g0427 597691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0427 399 MobiDBLite consensus disorder prediction 174 210 - -
Lac2g0427 399 MobiDBLite consensus disorder prediction 130 144 - -
Lac2g0427 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 300 IPR036638 GO:0046983(InterPro)
Lac2g0427 399 SMART finulus 241 291 IPR011598 GO:0046983(InterPro)
Lac2g0427 399 MobiDBLite consensus disorder prediction 130 225 - -
Lac2g0427 399 CDD bHLH_AtBPE_like 225 310 - -
Lac2g0427 399 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 130 365 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac2g0427 399 FunFam Basic helix-loop-helix transcription factor 232 304 - -
Lac2g0427 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 285 IPR011598 GO:0046983(InterPro)
Lac2g0427 399 Gene3D - 232 305 IPR036638 GO:0046983(InterPro)
Lac2g0427 399 Pfam Helix-loop-helix DNA-binding domain 238 286 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0418 Lac-Chr13:2925494 Lac2g0427 Lac-Chr2:3116135 1.50E-45 dispersed
Lac2g0427 Lac-Chr2:3116135 Lac8g2147 Lac-Chr8:39867065 2.60E-44 dispersed
Lac2g0427 Lac-Chr2:3116135 Lac4g2957 Lac-Chr4:47881544 5.70E-07 wgd
Lac2g0427 Lac-Chr2:3116135 Lac6g0252 Lac-Chr6:2037952 3.00E-08 wgd
Lac2g0427 Lac-Chr2:3116135 Lac6g0225 Lac-Chr6:1793054 3.90E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23447 PF00010 HLH 4.10E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0427 - - - 0.0