Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0434 ATGGATGGCCAGGGGCTTCTTCTCGGGCTGGGGCGGGGATCGGATGATCCAGTGCGGCCGCTCGTACCGGAAGTGGCCGGCGTCAAGAAGAAGCTGCAGGTTTTGAAGTTCGATGACATTTTGCCTTCTTTGACGCTCGGCTTGTCGATCGTTGTCGAGAAGAGCGGCGGCGAATCCGCCTCCGCCGCTGTCGCCGCCGAGGAGTTGATCCAGCAGGGTTCTTCGGGAAGTCCGGTGTCGTCGTTTTCGAATTCGTCGGGGTTTAAGAGGGAGAGAGACGGGTGGGGCGGCGGCGGCGGTGAAGAGAAGGAGGCGGAGGCGGAGGTGTATATGGAGAGAGGGGGTATGAAAGTTGGTGAGGAAGATGAAGATGGAAGTCCGAGGAAGAAACTGAGACTTACTAAAGAACAATCCGCCATTTTAGAAGATAACTTCAAAGAACATTCAAGTCTCAGTCCTAAGCAAAAGCAGGATTTGGCTAGACAGTTGAACCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACCGAAATGGACTGTGAATTACTGAAAAAATGCTGTGAAAAGCTCAAAGAAGAGAACGCAAGGCTTCAAAAGGAGCTTCAAGAGCTCAAATCTCTCAAACTAACGCCTCCACCGTTCTGTATGCAGCTTCAAGCCGCCACCCTCACCGTCTGCCCTTCCTGTGAGAGGTCCATTTGCGGCGGCGGCGGTGGCGGCGACGCGTCTCCGGCCACCTCCTTCTCGATTGGGCCAAAGCCTCATTTTCTCAAATTCCCCTTTAACCACCCGTCGGCTGCTTGTTAG 837 53.64 MDGQGLLLGLGRGSDDPVRPLVPEVAGVKKKLQVLKFDDILPSLTLGLSIVVEKSGGESASAAVAAEELIQQGSSGSPVSSFSNSSGFKRERDGWGGGGGEEKEAEAEVYMERGGMKVGEEDEDGSPRKKLRLTKEQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENARLQKELQELKSLKLTPPPFCMQLQAATLTVCPSCERSICGGGGGGDASPATSFSIGPKPHFLKFPFNHPSAAC 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3199286 3200961 + Lag0037072.1 Lac2g0434 597698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0434 278 Pfam Homeobox associated leucine zipper 184 217 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0434 278 MobiDBLite consensus disorder prediction 70 88 - -
Lac2g0434 278 CDD homeodomain 127 185 IPR001356 GO:0003677(InterPro)
Lac2g0434 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 63 242 IPR050762 -
Lac2g0434 278 Gene3D - 119 189 - -
Lac2g0434 278 SMART HOX_1 126 188 IPR001356 GO:0003677(InterPro)
Lac2g0434 278 SMART halz 184 227 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0434 278 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac2g0434 278 Pfam Homeodomain 128 182 IPR001356 GO:0003677(InterPro)
Lac2g0434 278 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677(InterPro)
Lac2g0434 278 Coils Coil 183 220 - -
Lac2g0434 278 SUPERFAMILY Homeodomain-like 125 192 IPR009057 -
Lac2g0434 278 FunFam Homeobox-leucine zipper protein 18 115 189 - -
Lac2g0434 278 MobiDBLite consensus disorder prediction 70 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0434 Lac-Chr2:3199286 Lac5g1885 Lac-Chr5:37163796 5.10E-55 dispersed
Lac1g2717 Lac-Chr1:48403763 Lac2g0434 Lac-Chr2:3199286 2.70E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23449 PF00046 Homeodomain 1.90E-17 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0434 K09338 - csv:101212868 343.584