Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0434 | ATGGATGGCCAGGGGCTTCTTCTCGGGCTGGGGCGGGGATCGGATGATCCAGTGCGGCCGCTCGTACCGGAAGTGGCCGGCGTCAAGAAGAAGCTGCAGGTTTTGAAGTTCGATGACATTTTGCCTTCTTTGACGCTCGGCTTGTCGATCGTTGTCGAGAAGAGCGGCGGCGAATCCGCCTCCGCCGCTGTCGCCGCCGAGGAGTTGATCCAGCAGGGTTCTTCGGGAAGTCCGGTGTCGTCGTTTTCGAATTCGTCGGGGTTTAAGAGGGAGAGAGACGGGTGGGGCGGCGGCGGCGGTGAAGAGAAGGAGGCGGAGGCGGAGGTGTATATGGAGAGAGGGGGTATGAAAGTTGGTGAGGAAGATGAAGATGGAAGTCCGAGGAAGAAACTGAGACTTACTAAAGAACAATCCGCCATTTTAGAAGATAACTTCAAAGAACATTCAAGTCTCAGTCCTAAGCAAAAGCAGGATTTGGCTAGACAGTTGAACCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACCGAAATGGACTGTGAATTACTGAAAAAATGCTGTGAAAAGCTCAAAGAAGAGAACGCAAGGCTTCAAAAGGAGCTTCAAGAGCTCAAATCTCTCAAACTAACGCCTCCACCGTTCTGTATGCAGCTTCAAGCCGCCACCCTCACCGTCTGCCCTTCCTGTGAGAGGTCCATTTGCGGCGGCGGCGGTGGCGGCGACGCGTCTCCGGCCACCTCCTTCTCGATTGGGCCAAAGCCTCATTTTCTCAAATTCCCCTTTAACCACCCGTCGGCTGCTTGTTAG | 837 | 53.64 | MDGQGLLLGLGRGSDDPVRPLVPEVAGVKKKLQVLKFDDILPSLTLGLSIVVEKSGGESASAAVAAEELIQQGSSGSPVSSFSNSSGFKRERDGWGGGGGEEKEAEAEVYMERGGMKVGEEDEDGSPRKKLRLTKEQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENARLQKELQELKSLKLTPPPFCMQLQAATLTVCPSCERSICGGGGGGDASPATSFSIGPKPHFLKFPFNHPSAAC | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3199286 | 3200961 | + | Lag0037072.1 | Lac2g0434 | 597698 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0434 | 278 | Pfam | Homeobox associated leucine zipper | 184 | 217 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac2g0434 | 278 | MobiDBLite | consensus disorder prediction | 70 | 88 | - | - | |
Lac2g0434 | 278 | CDD | homeodomain | 127 | 185 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0434 | 278 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 63 | 242 | IPR050762 | - | |
Lac2g0434 | 278 | Gene3D | - | 119 | 189 | - | - | |
Lac2g0434 | 278 | SMART | HOX_1 | 126 | 188 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0434 | 278 | SMART | halz | 184 | 227 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac2g0434 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 159 | 182 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac2g0434 | 278 | Pfam | Homeodomain | 128 | 182 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0434 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 124 | 184 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0434 | 278 | Coils | Coil | 183 | 220 | - | - | |
Lac2g0434 | 278 | SUPERFAMILY | Homeodomain-like | 125 | 192 | IPR009057 | - | |
Lac2g0434 | 278 | FunFam | Homeobox-leucine zipper protein 18 | 115 | 189 | - | - | |
Lac2g0434 | 278 | MobiDBLite | consensus disorder prediction | 70 | 105 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0434 | Lac-Chr2:3199286 | Lac5g1885 | Lac-Chr5:37163796 | 5.10E-55 | dispersed | |
Lac1g2717 | Lac-Chr1:48403763 | Lac2g0434 | Lac-Chr2:3199286 | 2.70E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23449 | PF00046 | Homeodomain | 1.90E-17 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0434 | K09338 | - | csv:101212868 | 343.584 |