Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0436 ATGGAAGAATATAATCATCTAAACGAGAACTCAAATCCGAGAGGAAATTTCTTGTACGCATCGGCAGTAGTTGGAGGGAATTCATCATCAGGAAATTTCGGAAGATCGAGCAATCAGACGGCTCAGATGGGAGTCAACACGTTTCATCTTCAACAAGGAACCGACTGTTTTCAAACCGACCAATCGCATCCGATTGTCAAGACTGAAGCCAGCACTTCGCACCATCAAGTTCTCAAATTTCACTACCCTTTAATGAGACCTGGCGGAGGAGGAGGAGGAGCCCAGCCGCCGCCGCCGACGACATGTCGGCCCGACGATAACGGCGTCGTCGATGTCGAAGCCATTAAGGCTAAAATCGTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCCGGAGAGGTCACAAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGAAGGATCGAATCTCAGCTCAGTTCTCTCTGCAACGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATCGGATCGTCCGAGGAGGAACAGGACAATAGCGGTGGAGAAACCGAACTACCGGAGATCGACCCGCGTGCTGAAGACAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTATCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGATGCAAGGCAGAAACTTCTCAATTGGTGGGAGTTACATTACAAATGGCCATACCCTTCAGAGACAGAGAAGGTGGCATTGGCTGAATCCACTGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTCATGGATGGCCTTCATCCTCCCAATGCCGCACTCTATATCGATGGTCACTACATGACCGATGGCCATTATCGACTCGGACCGTGA 1128 48.67 MEEYNHLNENSNPRGNFLYASAVVGGNSSSGNFGRSSNQTAQMGVNTFHLQQGTDCFQTDQSHPIVKTEASTSHHQVLKFHYPLMRPGGGGGGAQPPPPTTCRPDDNGVVDVEAIKAKIVAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGEVTKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSSLCNGPVRIFNSDEKCEGIGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3206245 3209881 - Lag0037074.1 Lac2g0436 597700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0436 375 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677(InterPro)
Lac2g0436 375 SUPERFAMILY Homeodomain-like 278 353 IPR009057 -
Lac2g0436 375 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac2g0436 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 116 347 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac2g0436 375 Pfam KNOX2 domain 168 214 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0436 375 CDD homeodomain 289 341 IPR001356 GO:0003677(InterPro)
Lac2g0436 375 Pfam ELK domain 257 278 IPR005539 GO:0003677(InterPro)
Lac2g0436 375 FunFam Homeobox protein knotted-1-like 2 282 344 - -
Lac2g0436 375 Pfam KNOX1 domain 114 156 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0436 375 MobiDBLite consensus disorder prediction 225 253 - -
Lac2g0436 375 Gene3D - 282 344 - -
Lac2g0436 375 SMART KNOX2_2 164 215 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0436 375 SMART HOX_1 279 344 IPR001356 GO:0003677(InterPro)
Lac2g0436 375 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac2g0436 375 SMART ELK_2 257 278 IPR005539 GO:0003677(InterPro)
Lac2g0436 375 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677(InterPro)
Lac2g0436 375 SMART KNOX1_2 113 157 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0182 Lac-Chr13:1274954 Lac2g0436 Lac-Chr2:3206245 4.90E-26 dispersed
Lac2g0436 Lac-Chr2:3206245 Lac6g1297 Lac-Chr6:13038368 1.80E-39 dispersed
Lac12g0544 Lac-Chr12:5849358 Lac2g0436 Lac-Chr2:3206245 2.00E-72 transposed
Lac1g3180 Lac-Chr1:51962719 Lac2g0436 Lac-Chr2:3206245 2.30E-76 transposed
Lac6g2534 Lac-Chr6:43116099 Lac2g0436 Lac-Chr2:3206245 2.80E-65 transposed
Lac2g0436 Lac-Chr2:3206245 Lac6g0216 Lac-Chr6:1692084 1.70E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23450 PF03791 KNOX2 9.80E-26 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0436 - - - 0.0