Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0436 | ATGGAAGAATATAATCATCTAAACGAGAACTCAAATCCGAGAGGAAATTTCTTGTACGCATCGGCAGTAGTTGGAGGGAATTCATCATCAGGAAATTTCGGAAGATCGAGCAATCAGACGGCTCAGATGGGAGTCAACACGTTTCATCTTCAACAAGGAACCGACTGTTTTCAAACCGACCAATCGCATCCGATTGTCAAGACTGAAGCCAGCACTTCGCACCATCAAGTTCTCAAATTTCACTACCCTTTAATGAGACCTGGCGGAGGAGGAGGAGGAGCCCAGCCGCCGCCGCCGACGACATGTCGGCCCGACGATAACGGCGTCGTCGATGTCGAAGCCATTAAGGCTAAAATCGTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGATCTTCCATGGTTTCCGGAGAGGTCACAAAGGATCCAGAACTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTACAAGGCCGATTCAAGAAGCCATGGATTTCATGCGAAGGATCGAATCTCAGCTCAGTTCTCTCTGCAACGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATCGGATCGTCCGAGGAGGAACAGGACAATAGCGGTGGAGAAACCGAACTACCGGAGATCGACCCGCGTGCTGAAGACAGAGAATTGAAGAACCACCTACTGAGGAAGTACAGTGGTTATCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGATGCAAGGCAGAAACTTCTCAATTGGTGGGAGTTACATTACAAATGGCCATACCCTTCAGAGACAGAGAAGGTGGCATTGGCTGAATCCACTGGATTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTCATGGATGGCCTTCATCCTCCCAATGCCGCACTCTATATCGATGGTCACTACATGACCGATGGCCATTATCGACTCGGACCGTGA | 1128 | 48.67 | MEEYNHLNENSNPRGNFLYASAVVGGNSSSGNFGRSSNQTAQMGVNTFHLQQGTDCFQTDQSHPIVKTEASTSHHQVLKFHYPLMRPGGGGGGAQPPPPTTCRPDDNGVVDVEAIKAKIVAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGEVTKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLSSLCNGPVRIFNSDEKCEGIGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3206245 | 3209881 | - | Lag0037074.1 | Lac2g0436 | 597700 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0436 | 375 | ProSiteProfiles | 'Homeobox' domain profile. | 277 | 340 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0436 | 375 | SUPERFAMILY | Homeodomain-like | 278 | 353 | IPR009057 | - | |
Lac2g0436 | 375 | Pfam | Homeobox KN domain | 297 | 336 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac2g0436 | 375 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 116 | 347 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac2g0436 | 375 | Pfam | KNOX2 domain | 168 | 214 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0436 | 375 | CDD | homeodomain | 289 | 341 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0436 | 375 | Pfam | ELK domain | 257 | 278 | IPR005539 | GO:0003677(InterPro) | |
Lac2g0436 | 375 | FunFam | Homeobox protein knotted-1-like 2 | 282 | 344 | - | - | |
Lac2g0436 | 375 | Pfam | KNOX1 domain | 114 | 156 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0436 | 375 | MobiDBLite | consensus disorder prediction | 225 | 253 | - | - | |
Lac2g0436 | 375 | Gene3D | - | 282 | 344 | - | - | |
Lac2g0436 | 375 | SMART | KNOX2_2 | 164 | 215 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0436 | 375 | SMART | HOX_1 | 279 | 344 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0436 | 375 | ProSitePatterns | 'Homeobox' domain signature. | 315 | 338 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac2g0436 | 375 | SMART | ELK_2 | 257 | 278 | IPR005539 | GO:0003677(InterPro) | |
Lac2g0436 | 375 | ProSiteProfiles | ELK domain profile. | 257 | 277 | IPR005539 | GO:0003677(InterPro) | |
Lac2g0436 | 375 | SMART | KNOX1_2 | 113 | 157 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0182 | Lac-Chr13:1274954 | Lac2g0436 | Lac-Chr2:3206245 | 4.90E-26 | dispersed | |
Lac2g0436 | Lac-Chr2:3206245 | Lac6g1297 | Lac-Chr6:13038368 | 1.80E-39 | dispersed | |
Lac12g0544 | Lac-Chr12:5849358 | Lac2g0436 | Lac-Chr2:3206245 | 2.00E-72 | transposed | |
Lac1g3180 | Lac-Chr1:51962719 | Lac2g0436 | Lac-Chr2:3206245 | 2.30E-76 | transposed | |
Lac6g2534 | Lac-Chr6:43116099 | Lac2g0436 | Lac-Chr2:3206245 | 2.80E-65 | transposed | |
Lac2g0436 | Lac-Chr2:3206245 | Lac6g0216 | Lac-Chr6:1692084 | 1.70E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23450 | PF03791 | KNOX2 | 9.80E-26 | No_clan | Lac | TF |
Pathway information
