Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0452 | ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGACTTAATGAGCACCAGCGATTGAACGATGCCCGACCTGTGACGCGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCGGGTTCGTCCTCTTCTGGGTCTATGGCGTCTTCCACTACAATGGCGAGATTGGAGGCCGTTGAATCGGTCGTTGATCGGACGGCTTCTGGGGATGTGGCCGGTGGGTGCGTGGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGCGCTTCTGATCCTGATTCGAGACAAGACACTGAGTCCGCTCAGATCGATGCCGCTAAGCGGATGAGCCTTGGCTGTTCGCCTTCCGTCTCAGGCAGTCAAGCCCTCGCCGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATACGGCATTACTGCAAACTCTAGCACTCGAGGAAAGATGCCACTGTTGGTTGATCTTAAAGAAATATGTGTTACAAGTGATATTGATTATGAAGTGATTCTAGTTAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAGTATGGCTTTATTTTAAGTGGCCTGGTTCAAAAAATTGCTGATATTGTTGTTGCTAGAATGGGCGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAGTTGCGTAGTTCTCTGAACACTATTATTCTACCACTTGGACGCCTTGATATTGGACTTGCACGTCATAGAGCTTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCGAGCTGTCAATTTTCAAATTATGGCTTTGATCGGAGACCCACAGATGTTATAGCAGTTCCTGAAGATACGCCAGTATTACAAAATGAAGGAACTGAAGCAATATCGATTTCTTCTCCTCAAGATGGAGTAGCAAATATTTGCAACTTAATATCCAAAGAAGCTTCAGACTTAGGTGCTGAATCAAAAGAAAACGTTGGGAACTCTATTGAAGAAATTCAAACTGGGAGTTCTGATTATGATTTTGGGAAACTTCTAGAATCAGAAAGCAACGCATGTGAAAGTTCATTGGGTGCATGTGCACAGTCGGCATCTGCACAAAAGAAGAAAGTTAAAAAAGTATCAAAGTATGTCATAAGTGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGATTCACAGGATAATGCTGAAAGCAAAGCGATTCATCAAATGTATCCAATCAATGGAAAAGGCATGGATGTTGGGCTTCAGTGCGACACTTTTGTGTTAGCAAGCCACGTACAGTCTTCCGCTACTTCTACTGAAGCAGAGTATTTGAACAATGTTGTACATGAAAATAAGCAGAAAATGATTACTGAGGGATCATCGGAAGATAAAAAACCCGAGACAAATGTGAACAAGCATGGCATTTTTTGGCCTCACAGCATGACAAATGAGGGGTTTGTGTTTGTTGATGTTAATGGTGAAGCAGGAAAATTGGTTGATGTTAATGGAACATTTCATCGTGAACATGTGGATGGTGTTTCGTTAATCTCTGATGCTGACTCTCATAAAAAACAACTAGGAAGTGCCTTAGTGGATGAAGAAAGAAGATGGTTGCAAGATAAGAGTGGTGGAACTATTCAGTGTTTTGATTTTCGTGAAAATCCATCAGAAAATTTGATAGAACTTAATGATAGTAACCTGCATGCTAGTGATGGCCACAGTGACACAATTAACCCAATATTAGGAGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATTGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGACCAAGATTTTTCTGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTTGTCCTTTTCATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACAGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAATTCTCAGCTTGATGAAAGGAGACGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTTCATAGAGATCTAAAGTCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAATACGTTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCGGCAGACGAGAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGCTGACAACATGCCGCATCCCATGGAAAGGTTTGAATCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGTGATTGTTGGCAAAGGGACACGCAATTGAGGCCGTCGTTCTCTCAGCTTATTACTCGATTGCGACGCCTTCAACGGCTTGTTCAGAAAACAAGCTCCAGTAATCACATACCGGAGTGA | 2898 | 42.86 | MSKMKHLLRKLHIGGGLNEHQRLNDARPVTRPSSSPSPGPSPNSNPSGSSSSGSMASSTTMARLEAVESVVDRTASGDVAGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSVSGSQALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPTDVIAVPEDTPVLQNEGTEAISISSPQDGVANICNLISKEASDLGAESKENVGNSIEEIQTGSSDYDFGKLLESESNACESSLGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNAESKAIHQMYPINGKGMDVGLQCDTFVLASHVQSSATSTEAEYLNNVVHENKQKMITEGSSEDKKPETNVNKHGIFWPHSMTNEGFVFVDVNGEAGKLVDVNGTFHREHVDGVSLISDADSHKKQLGSALVDEERRWLQDKSGGTIQCFDFRENPSENLIELNDSNLHASDGHSDTINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPADEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQRDTQLRPSFSQLITRLRRLQRLVQKTSSSNHIPE | 965 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3325129 | 3333593 | - | Lag0037090.1 | Lac2g0452 | 597716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0452 | 965 | MobiDBLite | consensus disorder prediction | 44 | 61 | - | - | |
Lac2g0452 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 918 | 940 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0452 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 874 | 896 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0452 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 808 | 826 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0452 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 855 | 865 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0452 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 769 | 782 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0452 | 965 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 814 | 826 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0452 | 965 | Pfam | Protein tyrosine and serine/threonine kinase | 695 | 947 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0452 | 965 | FunFam | Serine/threonine-protein kinase CTR1 | 774 | 957 | - | - | |
Lac2g0452 | 965 | CDD | STKc_MAP3K-like | 701 | 947 | - | - | |
Lac2g0452 | 965 | MobiDBLite | consensus disorder prediction | 13 | 61 | - | - | |
Lac2g0452 | 965 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 41 | 950 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lac2g0452 | 965 | FunFam | Serine/threonine-protein kinase isoform 1 | 686 | 773 | - | - | |
Lac2g0452 | 965 | ProSitePatterns | Protein kinases ATP-binding region signature. | 701 | 723 | IPR017441 | GO:0005524(InterPro) | |
Lac2g0452 | 965 | Gene3D | Transferase(Phosphotransferase) domain 1 | 774 | 961 | - | - | |
Lac2g0452 | 965 | SMART | serkin_6 | 695 | 954 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0452 | 965 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 138 | 342 | - | - | |
Lac2g0452 | 965 | Gene3D | Phosphorylase Kinase; domain 1 | 688 | 772 | - | - | |
Lac2g0452 | 965 | SUPERFAMILY | Protein kinase-like (PK-like) | 678 | 945 | IPR011009 | - | |
Lac2g0452 | 965 | ProSiteProfiles | Protein kinase domain profile. | 695 | 954 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0283 | Lac-Chr10:2144811 | Lac2g0452 | Lac-Chr2:3325129 | 1.80E-190 | dispersed | |
Lac2g0452 | Lac-Chr2:3325129 | Lac2g0788 | Lac-Chr2:6100163 | 1.10E-117 | dispersed | |
Lac11g0955 | Lac-Chr11:10528968 | Lac2g0452 | Lac-Chr2:3325129 | 4.80E-96 | transposed | |
Lac3g2146 | Lac-Chr3:26804401 | Lac2g0452 | Lac-Chr2:3325129 | 1.40E-190 | transposed | |
Lac2g0452 | Lac-Chr2:3325129 | Lac6g0288 | Lac-Chr6:2359709 | 1.80E-27 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85977 | PF07714 | PK_Tyr_Ser-Thr | 5.70E-65 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0452 | K04424 | - | csv:101214554 | 1665.97 |