Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0452 ATGTCGAAAATGAAACATCTTCTTCGAAAGCTTCACATCGGTGGGGGACTTAATGAGCACCAGCGATTGAACGATGCCCGACCTGTGACGCGACCCAGTTCGAGCCCCAGTCCAGGCCCAAGCCCCAATAGTAATCCATCGGGTTCGTCCTCTTCTGGGTCTATGGCGTCTTCCACTACAATGGCGAGATTGGAGGCCGTTGAATCGGTCGTTGATCGGACGGCTTCTGGGGATGTGGCCGGTGGGTGCGTGGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTGCAATTGGCTATGGCGATTAGCGCTTCTGATCCTGATTCGAGACAAGACACTGAGTCCGCTCAGATCGATGCCGCTAAGCGGATGAGCCTTGGCTGTTCGCCTTCCGTCTCAGGCAGTCAAGCCCTCGCCGAATTTCTCTCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACTTATACGGCATTACTGCAAACTCTAGCACTCGAGGAAAGATGCCACTGTTGGTTGATCTTAAAGAAATATGTGTTACAAGTGATATTGATTATGAAGTGATTCTAGTTAACCGCTTGCTTGATCCTGAGCTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCAGAGTTTCTGAGTATGGCTTTATTTTAAGTGGCCTGGTTCAAAAAATTGCTGATATTGTTGTTGCTAGAATGGGCGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACCCTCAGGAGTTATGAGTTGCGTAGTTCTCTGAACACTATTATTCTACCACTTGGACGCCTTGATATTGGACTTGCACGTCATAGAGCTTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGCATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAATTGATAATGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCGAGCTGTCAATTTTCAAATTATGGCTTTGATCGGAGACCCACAGATGTTATAGCAGTTCCTGAAGATACGCCAGTATTACAAAATGAAGGAACTGAAGCAATATCGATTTCTTCTCCTCAAGATGGAGTAGCAAATATTTGCAACTTAATATCCAAAGAAGCTTCAGACTTAGGTGCTGAATCAAAAGAAAACGTTGGGAACTCTATTGAAGAAATTCAAACTGGGAGTTCTGATTATGATTTTGGGAAACTTCTAGAATCAGAAAGCAACGCATGTGAAAGTTCATTGGGTGCATGTGCACAGTCGGCATCTGCACAAAAGAAGAAAGTTAAAAAAGTATCAAAGTATGTCATAAGTGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGTTAGAGAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGATTCACAGGATAATGCTGAAAGCAAAGCGATTCATCAAATGTATCCAATCAATGGAAAAGGCATGGATGTTGGGCTTCAGTGCGACACTTTTGTGTTAGCAAGCCACGTACAGTCTTCCGCTACTTCTACTGAAGCAGAGTATTTGAACAATGTTGTACATGAAAATAAGCAGAAAATGATTACTGAGGGATCATCGGAAGATAAAAAACCCGAGACAAATGTGAACAAGCATGGCATTTTTTGGCCTCACAGCATGACAAATGAGGGGTTTGTGTTTGTTGATGTTAATGGTGAAGCAGGAAAATTGGTTGATGTTAATGGAACATTTCATCGTGAACATGTGGATGGTGTTTCGTTAATCTCTGATGCTGACTCTCATAAAAAACAACTAGGAAGTGCCTTAGTGGATGAAGAAAGAAGATGGTTGCAAGATAAGAGTGGTGGAACTATTCAGTGTTTTGATTTTCGTGAAAATCCATCAGAAAATTTGATAGAACTTAATGATAGTAACCTGCATGCTAGTGATGGCCACAGTGACACAATTAACCCAATATTAGGAGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATTGGCTCATATGGCGAGGTTTATCGAGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGACCAAGATTTTTCTGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTGAGGCATCCTAATGTTGTCCTTTTCATGGGAGCGGTCACTCGCCCTCCTCATTTCTCTATCCTTACAGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTACTGCATCGTCCCAATTCTCAGCTTGATGAAAGGAGACGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACTTGCACACAAGTCATCCGACCATTGTTCATAGAGATCTAAAGTCTCCCAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTTTGTGATTTTGGTTTGTCACGTGTCAAGCAGAATACGTTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAAGTTCTAAGGAATGAACCGGCAGACGAGAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGCTGACAACATGCCGCATCCCATGGAAAGGTTTGAATCCAATGCAGGTTGTAGGAGCTGTTGGATTCCAGAATAGGCGCCTGGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGTGATTGTTGGCAAAGGGACACGCAATTGAGGCCGTCGTTCTCTCAGCTTATTACTCGATTGCGACGCCTTCAACGGCTTGTTCAGAAAACAAGCTCCAGTAATCACATACCGGAGTGA 2898 42.86 MSKMKHLLRKLHIGGGLNEHQRLNDARPVTRPSSSPSPGPSPNSNPSGSSSSGSMASSTTMARLEAVESVVDRTASGDVAGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSVSGSQALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITANSSTRGKMPLLVDLKEICVTSDIDYEVILVNRLLDPELQQLERQAYNIFMECRVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTLRSYELRSSLNTIILPLGRLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSCQFSNYGFDRRPTDVIAVPEDTPVLQNEGTEAISISSPQDGVANICNLISKEASDLGAESKENVGNSIEEIQTGSSDYDFGKLLESESNACESSLGACAQSASAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNAESKAIHQMYPINGKGMDVGLQCDTFVLASHVQSSATSTEAEYLNNVVHENKQKMITEGSSEDKKPETNVNKHGIFWPHSMTNEGFVFVDVNGEAGKLVDVNGTFHREHVDGVSLISDADSHKKQLGSALVDEERRWLQDKSGGTIQCFDFRENPSENLIELNDSNLHASDGHSDTINPILGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPADEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICDCWQRDTQLRPSFSQLITRLRRLQRLVQKTSSSNHIPE 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3325129 3333593 - Lag0037090.1 Lac2g0452 597716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0452 965 MobiDBLite consensus disorder prediction 44 61 - -
Lac2g0452 965 PRINTS Tyrosine kinase catalytic domain signature 918 940 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0452 965 PRINTS Tyrosine kinase catalytic domain signature 874 896 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0452 965 PRINTS Tyrosine kinase catalytic domain signature 808 826 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0452 965 PRINTS Tyrosine kinase catalytic domain signature 855 865 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0452 965 PRINTS Tyrosine kinase catalytic domain signature 769 782 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0452 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0452 965 Pfam Protein tyrosine and serine/threonine kinase 695 947 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0452 965 FunFam Serine/threonine-protein kinase CTR1 774 957 - -
Lac2g0452 965 CDD STKc_MAP3K-like 701 947 - -
Lac2g0452 965 MobiDBLite consensus disorder prediction 13 61 - -
Lac2g0452 965 PANTHER SERINE-THREONINE PROTEIN KINASE 41 950 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac2g0452 965 FunFam Serine/threonine-protein kinase isoform 1 686 773 - -
Lac2g0452 965 ProSitePatterns Protein kinases ATP-binding region signature. 701 723 IPR017441 GO:0005524(InterPro)
Lac2g0452 965 Gene3D Transferase(Phosphotransferase) domain 1 774 961 - -
Lac2g0452 965 SMART serkin_6 695 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0452 965 Pfam Ethylene-responsive protein kinase Le-CTR1 138 342 - -
Lac2g0452 965 Gene3D Phosphorylase Kinase; domain 1 688 772 - -
Lac2g0452 965 SUPERFAMILY Protein kinase-like (PK-like) 678 945 IPR011009 -
Lac2g0452 965 ProSiteProfiles Protein kinase domain profile. 695 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0283 Lac-Chr10:2144811 Lac2g0452 Lac-Chr2:3325129 1.80E-190 dispersed
Lac2g0452 Lac-Chr2:3325129 Lac2g0788 Lac-Chr2:6100163 1.10E-117 dispersed
Lac11g0955 Lac-Chr11:10528968 Lac2g0452 Lac-Chr2:3325129 4.80E-96 transposed
Lac3g2146 Lac-Chr3:26804401 Lac2g0452 Lac-Chr2:3325129 1.40E-190 transposed
Lac2g0452 Lac-Chr2:3325129 Lac6g0288 Lac-Chr6:2359709 1.80E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85977 PF07714 PK_Tyr_Ser-Thr 5.70E-65 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0452 K04424 - csv:101214554 1665.97