Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0460 ATGATGATGAAAGGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCATCTGGTCAAGTAACAAGAAATGAAGCCACTGACCCTCTGTATTCTCATCACTCCTCTGCTTCCACAAATCAACCCCCACCGCCACCGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGATGCCGAGGTGATAGCCTTGTCGCCAAAAGCGCTTTTGGCGACGAACAGATTCGTATGTGAGATCTGCAACAAGGGGTTTCAAAGAGATCAGAATCTTCAACTCCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGAAAGAAGGTGTACGTGTGCCCAGAACCAACATGCGTCCACCATCACCCATCAAGGGCTCTAGGGGATCTAACTGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCGATGTTTTGGCTCAGGAAAGTACCAATTTTACATCATCAGCCATAAATAACAACAACAACCCAATAATTTTCCCATCTCTTCGCTCATTTCCTCTTAAAACTGAAAACCAAGACCCATTTTTTCCTTTAACTGAAAACAGCAATAATAATATCCTCATTCCTTTTCACAACCCTCCACAAAACCCTAACCCTACTTCATTCGGGTTCGGGTTTCCGGGTCCGGGTTCTGCATGGGAATTGAATTCTGCAGCTGAAACTGCTCCACTTTTTCACCACATGATGGCTTTCGAAGAGGCCTCGTTCGAAGAAGCCTTGAGCGGGATACTGATGAATAGTAGTAAAGGTGGTAGAGACGGCGGCGGTGCCGCTGCCGGAGAGATAACGAGGGATTTTCTGGGGCTGAGGGCGGTGGCGCGACAGGCGGATCATCGGCTGTTCGAGAATGAGACGATGATAAACGACATGTCGAATTTGGATTCTTCTTCTTCTTCCACGTTTGGATTGCAACAGACTCAGACGACATTTTGGCGTGATTAA 1152 47.14 MMMKGNLMVDENLSVLTCASGQVTRNEATDPLYSHHSSASTNQPPPPPPPSKKKRNLPGNPDPDAEVIALSPKALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESTNFTSSAINNNNNPIIFPSLRSFPLKTENQDPFFPLTENSNNNILIPFHNPPQNPNPTSFGFGFPGPGSAWELNSAAETAPLFHHMMAFEEASFEEALSGILMNSSKGGRDGGGAAAGEITRDFLGLRAVARQADHRLFENETMINDMSNLDSSSSSTFGLQQTQTTFWRD 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3376502 3378110 - Lag0037098.1 Lac2g0460 597724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0460 383 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 183 223 - -
Lac2g0460 383 MobiDBLite consensus disorder prediction 32 66 - -
Lac2g0460 383 MobiDBLite consensus disorder prediction 41 56 - -
Lac2g0460 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Lac2g0460 383 FunFam protein indeterminate-domain 5, chloroplastic-like 135 214 - -
Lac2g0460 383 FunFam protein indeterminate-domain 12-like 60 128 - -
Lac2g0460 383 SMART c2h2final6 81 103 IPR013087 -
Lac2g0460 383 SMART c2h2final6 157 177 IPR013087 -
Lac2g0460 383 Gene3D Classic Zinc Finger 62 128 - -
Lac2g0460 383 Gene3D Classic Zinc Finger 135 214 - -
Lac2g0460 383 SUPERFAMILY beta-beta-alpha zinc fingers 80 177 IPR036236 -
Lac2g0460 383 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 156 180 - -
Lac2g0460 383 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 297 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac2g0460 383 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 118 152 - -
Lac2g0460 383 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0460 Lac-Chr2:3376502 Lac4g2236 Lac-Chr4:42057027 1.40E-87 dispersed
Lac2g0460 Lac-Chr2:3376502 Lac4g2989 Lac-Chr4:48131014 5.70E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23453 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0460 K25870 - csv:101215280 488.804